Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00787 ATGGATTTCGATCAGGAGCACGACGACCCCGAAGAGGAAATGGAGGCAATTCCGGAGCAGACGGCTGCTTTCGACTCGATGACATCTGAGAGGCTGAGAATGGGAAACGACGGCGGAGAGGGAACGTCCTCAACGAGAAAAATTATCTCCGGTGTAAGATACAGGGAATGCCTGAAGAACCACGCTGTAAACATCGGTGCCCACGCCGTGGACGGGTGTGGCGAGTTCATTGCCGCCGGAGAAGAGGGTACTTTAGACGGCCTGAAATGCGCTGCATGTAACTGCCACCGGAATTTCCACCGGAAAGAAACAGATGCAGATCGCTCGTTTCAACAGTACCACCATTATCAACAGCAGTATCACCACCCACAATTCTCTCCCTTCTACCGAGGGCCTCTACAACCATCTGGGTATCTTCACCTGGCCTCGTCTTCGATGCAGCAGAGACCGTTGGCATTGCCTTCGCCGTCCGGCGGAGGAGCGTTCAGCAGAAACGAAGATGCATCGAATCCAAGCAGTAGTGGAGGAGATGGAAGTGGGTTGAAGAAGAGATTTAGATCCAAGTTTACTCAGGAACAGAAAGAAAAGATGTTGGCTTTCGCAGAGAGGCTTGGGTGGAGAATTCAGAAACACGACGAAGGTGCGGTGGATCAGTTTTGTGCAGAGAACTGTGTAAAACGACAGGTTTTCAAGGTTTGGATGCACAACAACAAGCACACACTTGGTAAGAAACCCTAA 738 51.08 MDFDQEHDDPEEEMEAIPEQTAAFDSMTSERLRMGNDGGEGTSSTRKIISGVRYRECLKNHAVNIGAHAVDGCGEFIAAGEEGTLDGLKCAACNCHRNFHRKETDADRSFQQYHHYQQQYHHPQFSPFYRGPLQPSGYLHLASSSMQQRPLALPSPSGGGAFSRNEDASNPSSSGGDGSGLKKRFRSKFTQEQKEKMLAFAERLGWRIQKHDEGAVDQFCAENCVKRQVFKVWMHNNKHTLGKKP 245
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 7860916 7861653 - Bda005537.1 Bda11g00787 15895
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00787 245 SUPERFAMILY Homeodomain-like 169 243 IPR009057 -
Bda11g00787 245 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 53 103 IPR006456 -
Bda11g00787 245 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 182 238 IPR006455 -
Bda11g00787 245 MobiDBLite consensus disorder prediction 162 177 - -
Bda11g00787 245 MobiDBLite consensus disorder prediction 149 182 - -
Bda11g00787 245 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 35 244 - -
Bda11g00787 245 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 35 244 - -
Bda11g00787 245 Pfam ZF-HD protein dimerisation region 52 104 IPR006456 -
Bda11g00787 245 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 54 103 IPR006456 -
Bda11g00787 245 Gene3D - 167 243 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00110 Bda-Chr4:2477341 Bda11g00787 Bda-Chr11:7860916 7.40E-86 dispersed
Bda11g00787 Bda-Chr11:7860916 Bda11g01865 Bda-Chr11:53736302 2.66E-59 dispersed
Bda11g00787 Bda-Chr11:7860916 Bda04g00124 Bda-Chr4:2892638 1.34E-84 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16621 PF04770 ZF-HD_dimer 7.40E-29 No_clan Bda TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00787 - - zju:107410162 305.449