Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda11g00787 | ATGGATTTCGATCAGGAGCACGACGACCCCGAAGAGGAAATGGAGGCAATTCCGGAGCAGACGGCTGCTTTCGACTCGATGACATCTGAGAGGCTGAGAATGGGAAACGACGGCGGAGAGGGAACGTCCTCAACGAGAAAAATTATCTCCGGTGTAAGATACAGGGAATGCCTGAAGAACCACGCTGTAAACATCGGTGCCCACGCCGTGGACGGGTGTGGCGAGTTCATTGCCGCCGGAGAAGAGGGTACTTTAGACGGCCTGAAATGCGCTGCATGTAACTGCCACCGGAATTTCCACCGGAAAGAAACAGATGCAGATCGCTCGTTTCAACAGTACCACCATTATCAACAGCAGTATCACCACCCACAATTCTCTCCCTTCTACCGAGGGCCTCTACAACCATCTGGGTATCTTCACCTGGCCTCGTCTTCGATGCAGCAGAGACCGTTGGCATTGCCTTCGCCGTCCGGCGGAGGAGCGTTCAGCAGAAACGAAGATGCATCGAATCCAAGCAGTAGTGGAGGAGATGGAAGTGGGTTGAAGAAGAGATTTAGATCCAAGTTTACTCAGGAACAGAAAGAAAAGATGTTGGCTTTCGCAGAGAGGCTTGGGTGGAGAATTCAGAAACACGACGAAGGTGCGGTGGATCAGTTTTGTGCAGAGAACTGTGTAAAACGACAGGTTTTCAAGGTTTGGATGCACAACAACAAGCACACACTTGGTAAGAAACCCTAA | 738 | 51.08 | MDFDQEHDDPEEEMEAIPEQTAAFDSMTSERLRMGNDGGEGTSSTRKIISGVRYRECLKNHAVNIGAHAVDGCGEFIAAGEEGTLDGLKCAACNCHRNFHRKETDADRSFQQYHHYQQQYHHPQFSPFYRGPLQPSGYLHLASSSMQQRPLALPSPSGGGAFSRNEDASNPSSSGGDGSGLKKRFRSKFTQEQKEKMLAFAERLGWRIQKHDEGAVDQFCAENCVKRQVFKVWMHNNKHTLGKKP | 245 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 7860916 | 7861653 | - | Bda005537.1 | Bda11g00787 | 15895 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda11g00787 | 245 | SUPERFAMILY | Homeodomain-like | 169 | 243 | IPR009057 | - | |
| Bda11g00787 | 245 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 53 | 103 | IPR006456 | - | |
| Bda11g00787 | 245 | TIGRFAM | homeo_ZF_HD: homeobox domain, ZF-HD class | 182 | 238 | IPR006455 | - | |
| Bda11g00787 | 245 | MobiDBLite | consensus disorder prediction | 162 | 177 | - | - | |
| Bda11g00787 | 245 | MobiDBLite | consensus disorder prediction | 149 | 182 | - | - | |
| Bda11g00787 | 245 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 35 | 244 | - | - | |
| Bda11g00787 | 245 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 1 | 35 | 244 | - | - | |
| Bda11g00787 | 245 | Pfam | ZF-HD protein dimerisation region | 52 | 104 | IPR006456 | - | |
| Bda11g00787 | 245 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 54 | 103 | IPR006456 | - | |
| Bda11g00787 | 245 | Gene3D | - | 167 | 243 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda04g00110 | Bda-Chr4:2477341 | Bda11g00787 | Bda-Chr11:7860916 | 7.40E-86 | dispersed | |
| Bda11g00787 | Bda-Chr11:7860916 | Bda11g01865 | Bda-Chr11:53736302 | 2.66E-59 | dispersed | |
| Bda11g00787 | Bda-Chr11:7860916 | Bda04g00124 | Bda-Chr4:2892638 | 1.34E-84 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 16621 | PF04770 | ZF-HD_dimer | 7.40E-29 | No_clan | Bda | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda11g00787 | - | - | zju:107410162 | 305.449 |