Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00788 ATGGGTTACTGCAACGCTAAGTCAGCAATATCCACTTGTGATTCCTGCTATGGCGATCTCAAAAACAAGCCCCCGACGGCAGCTGTTAAAATCACAAAACCTTCCATTATCAGTAGCTACAGTCCGGAAGAGAACGAGATTGAGATACTCTCTAGGATCCGAAATCCTACACTCGTTAATCTGATTGGAGTTTGCACCCATACGAAGAAAAGGAAATTGATCGTCGTCGAGTACATGTCCAACGGCTCCCTCTACGATCTGCTCCACTCTAACTCCTCGCCGCCGAGCTGGAACCTTCGGATCCGGCTGGCGTTGCAAGTGGCGAAAGCTGTCGAGACTTTGCACTTTTCTAATCCGCCGGTGCTACACCGAGACATAAAATCGTCCAACATTTTGATCGACGAGAAATTCCACGCTAGGCTTGGAGATTTCGGACTGGCTGTTAGAGGACACATTGAGGAACTACGAATGAAATGTACGCCTCCGGCGGGGACGTTAGGTTATCTTGACCCTGGATATCTAGCGCCAGCCGATCTGAGCTTCAAAAGCGACGTCTTCAGCTTTGGAATCTTGTTGTTTGAGATTATAACCGGCAGGAAAGCCATCGACTTCGATTACAGCCCTCCTTTCGTAGTTGAATGGGCAGTGCCCATGGTGAAACGATGCGAGTTCAGCAAAATATATGACGGGAGGATCGGAGCCCCGGTGGATCCAGCCGTGATCCGGTTCATGGCGGTATTGGCGACCAGATGTGTGAGATCGAGGGCTGAGAAACGCCCGGAAATGGCGGAGATAGTAGAGTGCTTGACAATTTTGAGCAAGTTAGTTCACACGCCGGCAACGTGGAACAAAGTAAGAGAGAAGGTGCGGCGCGTAAGAATAATACAACCGTTGATTAAGCGAGAGCAATGGAGAGCAGAGATAGTCAAGGGGAAGAAACAGGGAAGCAGAAGAAATCGAAAAGTATCCAGTGTTTCGATAGCAGAGTACGAAAGTGGAGTCGTTGATCGTGTGGTGAGATCAAAGTCCGTGGGTTCAACGAACGATCAAAGACCACATCAGCCTTCACATGGAATTCTACTGACCTATAGTGGAGCTAGTTCTTCAGAGCAAAACAAAATGTCAGCGTCGAGGAGGCTAAGAAAGTCAAAGTCAATGGGCCCCACATTGAATTTCCATCCATAA 1185 48.52 MGYCNAKSAISTCDSCYGDLKNKPPTAAVKITKPSIISSYSPEENEIEILSRIRNPTLVNLIGVCTHTKKRKLIVVEYMSNGSLYDLLHSNSSPPSWNLRIRLALQVAKAVETLHFSNPPVLHRDIKSSNILIDEKFHARLGDFGLAVRGHIEELRMKCTPPAGTLGYLDPGYLAPADLSFKSDVFSFGILLFEIITGRKAIDFDYSPPFVVEWAVPMVKRCEFSKIYDGRIGAPVDPAVIRFMAVLATRCVRSRAEKRPEMAEIVECLTILSKLVHTPATWNKVREKVRRVRIIQPLIKREQWRAEIVKGKKQGSRRNRKVSSVSIAEYESGVVDRVVRSKSVGSTNDQRPHQPSHGILLTYSGASSSEQNKMSASRRLRKSKSMGPTLNFHP 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7865024 7866366 - Bda005538.1 Bda11g00788 15896

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00788 394 ProSiteProfiles Protein kinase domain profile. 1 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda11g00788 394 MobiDBLite consensus disorder prediction 343 374 - -
Bda11g00788 394 Pfam Protein tyrosine and serine/threonine kinase 22 269 IPR001245 GO:0004672|GO:0006468
Bda11g00788 394 Gene3D Transferase(Phosphotransferase) domain 1 83 291 - -
Bda11g00788 394 PANTHER OS01G0750732 PROTEIN 35 387 - -
Bda11g00788 394 Gene3D Phosphorylase Kinase; domain 1 13 82 - -
Bda11g00788 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Bda11g00788 394 SUPERFAMILY Protein kinase-like (PK-like) 24 279 IPR011009 -
Bda11g00788 394 SMART serkin_6 17 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda11g00788 394 PRINTS Tyrosine kinase catalytic domain signature 183 205 IPR001245 GO:0004672|GO:0006468
Bda11g00788 394 PRINTS Tyrosine kinase catalytic domain signature 76 89 IPR001245 GO:0004672|GO:0006468
Bda11g00788 394 PRINTS Tyrosine kinase catalytic domain signature 115 133 IPR001245 GO:0004672|GO:0006468
Bda11g00788 394 PANTHER - 35 387 - -
Bda11g00788 394 MobiDBLite consensus disorder prediction 343 394 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00788 - - - jre:108982029 391.349
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g00901 Bda11g00788 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00788 Bda-Chr11:7865024 Bda13g00288 Bda-Chr13:3617508 1.63E-54 dispersed
Bda01g00901 Bda-Chr1:41996970 Bda11g00788 Bda-Chr11:7865024 9.10E-126 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g480 . . Bda01g00901 . . . . . . . . . . . . . . Bhi04g00811 . . . . . Lcy13g1503 Cla08g01146 . . . . . . . . Cone17ag1191 . . . . Cme03g01826 . . Bda11g00788 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01004 Csa02g02188 Chy03g01329 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012718 2 1 0 0 0 0 1 0 0 1 1 0 1 1 0 1 0 1 1 0 1 0 0 0 0 1 1 1 0 1 16
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69905 PF07714 PK_Tyr_Ser-Thr 7.60E-37 CL0016 Bda PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00788 Bda_Chr11 FPKM 1.477296 1.350585 30.438526 32.665184 20.166286 22.44591 22.909449 66.864876 71.780319