Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00790 ATGCATTCATCGTTGATCCAGAGGCTATCTCTGGAATATGAACTGGAGGGTCATAATGGTTGTGTTAACACTGTGGCTTGGAATGCCAGTGGTTCGCTTTTGATATCTGGATCAGATGACACTCGGATTAATATCTGGAGCTATCCTGGTCAAAAGCTGTTGCATTCCATTGAAACTGGCCACTCTGCCAACATATTCTGCACAAAATTTGTGCCTGAAACATCTGATGAGCTTGTGGCTTCGGGAGCAGGGGATGCAGAAGTTCGGTTATTTAATTTGTCCCGCGTAAGTGGAACTAGACTAAATGATAATGCTATTACTCCATCAGCATTGTATCAATGTCACACTAAAAGAGTGAAAAAGTTAGCTGTTGAAGTCGGAAATCCCCATGTCATATGGAGTGCAAGTGAGGATGGGACTCTTCGACAACATGACTTCAGAGAAGGCTCTTCTTGTCCTCCTGTTGGGTCTTCTCGCCAAGAATGTCGCAATGTTCTTCTTGACTTACGGTGCGGGGCAAAAAGTTCCCTGGCCGATCCTCCTAAACAAACCTTAGCGCTAAAATCCTGTGACATCAGTTCCACTAAGCCTCATTTTCTCGTGGTTGGTGGAAGTGATGCATTTGCACGATTGTATGATAGAAGGATGCTGCCATCCCTATCCTCGAGTCAGAGAAAACGGTTGCCTCCTCAATGCGTTAATTATTTCTGTCCCATGCATCTTTCGGAGCGTGGACATTCAAGCTTGCTTCTAACTCATGTTACCTTTAGCCCGAATGGAGAAGAAGTTCTCCTTAGCTATAGTGGAGAACATGTATATTTGATGAATTTAGATCATGGTATGCTAGCTTGCGTCGAAAAGAAACATTTTCCACTGCCAACTAATTTATTCATGGCTTCCTGTGAATTTGCTTCATTTGCTTTTGCAGCTGGTGGGAGTTTCATGCAGTATTCATCTGGAGATTTTTCCAAGATAATGAACTTCTCTCCTGTGTTGAATGGAGTGGAATTCCGGCGTCACGAGCCTTATATCTACACCAATGGTCTTACTAAAAAAAACAAGATTCCTGAGCTTGACAAATGCAAAACACTTGTACAAACTGCTAAAAAATGCTTGGAGGAGGATACAAATTACTTGTGTGGGATTGAAGCCAGCAATGAGATTTTGGATGGTTATGAACATGATATAGGGACCTTAATGAAGCATGATTGCTTATGCACTCGTGCAGCCTTGTTGCTGAAGCGGAAGTGGAAAAATGATTGTTATATGGCCATCAGAGATTGTTATCATGCGTGGAGAATTGATAACGTGTCCTTCAGAGCTCATTCCTACATGTCTGAAGCTTTATCACAGATGGGCAAACATAAAGAAGCCCTAGATTTTGCAATCGCTGCTCAATGTCTGAACCCATTTGATTCTGAAGTGGGAGAAAGAGTAAATAATTTAGAAGCAGACCTGGCTGCAGCTGAAGCTGAAAAATCTAGTAAGATAAATGATGGAACAGCGAGGTCTGATACACGAAGTGGAAGAATATTAACATTGAGTGATATTCTCTACCGATCAGATGCAAATAGTGATGCTTCACTTGATGGTCCAATATCTGAAAGAGAAGATTCTGAATATGATGAGGAAGTAGAGTTAGACTTTGAAACATCAATTTCTGGTTATGACACGGACAATGTTGACCCTAACATTGTGCATGGAAGTATAAATCTCAGAATGCATAGAAGGGGTGATTCATCTAGAGACAGTGGTGGTGCTAATGGCTCTTGTGGGTCGCTACCATCATCATCACAGAGTGAAAAAACAATTTATCAGCCTGAATTTGCTGTTGATATGAAGATGAGATATGTTGGCCATTGCAATATCGGAACTGATATCAAACAGGCTAGTTTTCTTGGACAAAGAGGTGAGTATGTGGCCAGTGGAAGTGATGATGGCAGGTGGTTTATTTGGGAAAAGCGAACAGGCAGACTCGTGAAAATGCTTATGGGAGATGGGGCTGTTGTAAATTGTGTGCAATGCCATCCATTTGACTGTGCTGTTGCGACTAGTGGGATTGATAACACCATAAAGATGTGGACTCCTAGCGCACTCATCCCATCTATTGTAGCTGGGGGAGCAGCAGGACCAGAGACTGCTGATGTAATGCCTGTGATTGAAAACAATCAAAGCAAACTATTGCGTAATCGTGAAGCTCTTTTGCCTTTTGAAATTATTGAGCGCCTTAGGATGCATGAGTTCAGTGAAGGAAGCTTACATCCATTTGAGTGTGCTCAGAGTTGA 2286 42.21 MHSSLIQRLSLEYELEGHNGCVNTVAWNASGSLLISGSDDTRINIWSYPGQKLLHSIETGHSANIFCTKFVPETSDELVASGAGDAEVRLFNLSRVSGTRLNDNAITPSALYQCHTKRVKKLAVEVGNPHVIWSASEDGTLRQHDFREGSSCPPVGSSRQECRNVLLDLRCGAKSSLADPPKQTLALKSCDISSTKPHFLVVGGSDAFARLYDRRMLPSLSSSQRKRLPPQCVNYFCPMHLSERGHSSLLLTHVTFSPNGEEVLLSYSGEHVYLMNLDHGMLACVEKKHFPLPTNLFMASCEFASFAFAAGGSFMQYSSGDFSKIMNFSPVLNGVEFRRHEPYIYTNGLTKKNKIPELDKCKTLVQTAKKCLEEDTNYLCGIEASNEILDGYEHDIGTLMKHDCLCTRAALLLKRKWKNDCYMAIRDCYHAWRIDNVSFRAHSYMSEALSQMGKHKEALDFAIAAQCLNPFDSEVGERVNNLEADLAAAEAEKSSKINDGTARSDTRSGRILTLSDILYRSDANSDASLDGPISEREDSEYDEEVELDFETSISGYDTDNVDPNIVHGSINLRMHRRGDSSRDSGGANGSCGSLPSSSQSEKTIYQPEFAVDMKMRYVGHCNIGTDIKQASFLGQRGEYVASGSDDGRWFIWEKRTGRLVKMLMGDGAVVNCVQCHPFDCAVATSGIDNTIKMWTPSALIPSIVAGGAAGPETADVMPVIENNQSKLLRNREALLPFEIIERLRMHEFSEGSLHPFECAQS 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7871614 7882482 - Bda005540.1 Bda11g00790 15898

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00790 761 Gene3D Tetratricopeptide repeat domain 360 507 IPR011990 GO:0005515
Bda11g00790 761 Gene3D - 2 358 IPR015943 GO:0005515
Bda11g00790 761 Gene3D - 572 698 IPR015943 GO:0005515
Bda11g00790 761 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 1 761 IPR045151 -
Bda11g00790 761 Coils Coil 472 499 - -
Bda11g00790 761 PANTHER WD AND TETRATRICOPEPTIDE REPEATS PROTEIN 1 1 761 - -
Bda11g00790 761 Pfam WD domain, G-beta repeat 13 47 IPR001680 GO:0005515
Bda11g00790 761 MobiDBLite consensus disorder prediction 575 600 - -
Bda11g00790 761 ProSiteProfiles Trp-Asp (WD) repeats profile. 15 56 IPR001680 GO:0005515
Bda11g00790 761 SUPERFAMILY TPR-like 402 475 IPR011990 GO:0005515
Bda11g00790 761 MobiDBLite consensus disorder prediction 583 600 - -
Bda11g00790 761 SUPERFAMILY WD40 repeat-like 7 694 IPR036322 GO:0005515
Bda11g00790 761 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 15 47 - -
Bda11g00790 761 SMART WD40_4 234 276 IPR001680 GO:0005515
Bda11g00790 761 SMART WD40_4 50 92 IPR001680 GO:0005515
Bda11g00790 761 SMART WD40_4 173 213 IPR001680 GO:0005515
Bda11g00790 761 SMART WD40_4 8 47 IPR001680 GO:0005515
Bda11g00790 761 SMART WD40_4 656 695 IPR001680 GO:0005515
Bda11g00790 761 SMART WD40_4 610 653 IPR001680 GO:0005515
Bda11g00790 761 SMART WD40_4 105 145 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00790 K11807 WDTC1, DCAF9; WD and tetratricopeptide repeats protein 1 - vvi:100255806 1084.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00790 Bda-Chr11:7871614 Bda04g00634 Bda-Chr4:54972794 4.46E-07 dispersed
Bda11g00790 Bda-Chr11:7871614 Bda06g00470 Bda-Chr6:6732201 1.05E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g482 . . . . Bpe02g00134 . . Bma01g02591 . . . Cma09g00587 . . . Cpe06g00448 . . . . . . . . . . . . . . . Cone4ag1309 . . . . Csa03g04480 Chy04g00221 . . . Bda11g00790 . . . . . . Cmo01g01684 Cmo09g00572 . . . Car09g00516 . . Bhi09g02483 . . . Hepe01g2160 Mch11g0699 . . . . . . . . . . . Cme04g00248
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005324 1 4 1 1 1 0 3 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 4 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00790 Bda_Chr11 FPKM 11.345893 12.514945 5.836148 3.930022 6.999331 5.909024 7.079444 5.472532 6.477353