Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00800 ATGCGGGGGCTCTTAGTGACTTGCGCCGCCAAGACCGTCAATACGACGCCGTCTCCGTCTCCGTCTGGTTCGTTGGCTCCGGACGACCAAAAAGCCAAGGAGGTGAAGCTCTGGGGTGGTCGATTTGAGGAGTGCGTCACCGATGTTGTTGAGCGCTTCACCGAGTCCATATCATTTGATAAGGAGCTCTATAAGCACGATATAATGGGAAGCAGGGCTCATGCTTCAATGCTGGCGAAGCAGGGGCTTATGACTGTCTCCGAGAGAGACAGTATTCTTGAAGGTCTTGATGAGATTGAGAGGCGAATTACAAGTGGTGAGTTTGTTTGGAGAAGTGATAGAGAAGATGTGCACATGAACATTGAAGCAGAACTTACAGACATGATTGGTGAACCTGCTAAAAAACTGCATACTGCGAGGAGCCGCAATGACCAAGTTATGACTGATTTTCGGTTATGGTGTCGTGATGCAATTGATGCAATATTGAAGCGTATTAAACACCTTCAGGTTGCACTAGTAACCTTGTCATTAAAGAACAAGGGTCTCATTGTTCCCGGTTACACACATTTACAAAGGGCACAACCTGTTTTACTCCAGCATCTTCTATTGGCATTTGTCGAACAGCTTGAACGAGATGCTGATCGCTTATTGGATTGTAGAGATAGGCTAAATTTTTGCCCATTAGGTGCATGTGCTTTGGCTGGCACAGGTCTTCCCATTGATAGGTTCATGACTTCTGATGCTCTAGGATTTACTGCTCCAATGAGAAACAGTATCGATGCAGTTTCAGATCGGGATTTTGCTTTGGAGTTTCTTTCTGCTAATTCTATCACAGCCATACATCTGTCTCGGCTCAGGGAGGAATGGGTATTGTGGGCTTCTGAGGAGTTTGGATTTATCACACCTAGTGACTCTGTTTCTACGGGAAGTAGTATAATGCCTCAGAAGAAAAATCCAGATCCAATGGAACTGGTTCGTGGGAAGTCTGCTAGAGTCATAGGAGATTTGGTCACTGTTCTCACATTGTGCAAAGGACTTCCTCTTGCTTATAATCGAGATTTGCAGGAAGACAAGGAGCCTGTATTTGACAGTGTAAAGACAATTTTAGGAATGCTTGAAGTGTCTGCGGAGTTTTGCCAAAATATTACTTTCAACCAAGAGAGAATTCACGGGGCCTTACCAGCAGGTCATCTTGATGCTACAACACTTGCTGATTATCTTGTGAAGAAGGCAAGTAATCTATTTCACTTTCACCTTGGGATACCTTTCAGGACTTCTCATGATATAGTAGGCAAATGTGTTGCCATTTGCGTTGGAAAACGCTGCCAGCTTCAGGATTTAAGTCTTGATGAGCTAAGAAGTATAAACGCTGTGTTCGATGAGGATGTGTATAATTTTCTTGGAGTCGAGAATGCAATCAAGAATTTTAGCTCCTATGGGTCCACAGGCGCAGATTGTGTTGCCACTCAGGTTGATTTCTGGGTCACAAGACTTGGAATCAGCCAGTAA 1509 44.47 MRGLLVTCAAKTVNTTPSPSPSGSLAPDDQKAKEVKLWGGRFEECVTDVVERFTESISFDKELYKHDIMGSRAHASMLAKQGLMTVSERDSILEGLDEIERRITSGEFVWRSDREDVHMNIEAELTDMIGEPAKKLHTARSRNDQVMTDFRLWCRDAIDAILKRIKHLQVALVTLSLKNKGLIVPGYTHLQRAQPVLLQHLLLAFVEQLERDADRLLDCRDRLNFCPLGACALAGTGLPIDRFMTSDALGFTAPMRNSIDAVSDRDFALEFLSANSITAIHLSRLREEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTVLTLCKGLPLAYNRDLQEDKEPVFDSVKTILGMLEVSAEFCQNITFNQERIHGALPAGHLDATTLADYLVKKASNLFHFHLGIPFRTSHDIVGKCVAICVGKRCQLQDLSLDELRSINAVFDEDVYNFLGVENAIKNFSSYGSTGADCVATQVDFWVTRLGISQ 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7952796 7956349 - Bda033061 Bda11g00800 15908

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00800 502 PANTHER ARGININOSUCCINATE LYASE 50 501 - -
Bda11g00800 502 PANTHER ARGININOSUCCINATE LYASE 50 501 IPR009049 GO:0004056|GO:0042450
Bda11g00800 502 Gene3D Fumarase/aspartase (Central domain) 153 491 - -
Bda11g00800 502 Gene3D - 394 475 - -
Bda11g00800 502 TIGRFAM argH: argininosuccinate lyase 37 494 IPR009049 GO:0004056|GO:0042450
Bda11g00800 502 Gene3D - 56 263 IPR024083 -
Bda11g00800 502 ProSitePatterns Fumarate lyases signature. 309 318 IPR020557 GO:0003824
Bda11g00800 502 Hamap Argininosuccinate lyase [argH]. 36 496 IPR009049 GO:0004056|GO:0042450
Bda11g00800 502 CDD Argininosuccinate_lyase 56 498 IPR009049 GO:0004056|GO:0042450
Bda11g00800 502 PRINTS Fumarate lyase superfamily signature 309 325 IPR000362 -
Bda11g00800 502 PRINTS Fumarate lyase superfamily signature 181 199 IPR000362 -
Bda11g00800 502 PRINTS Fumarate lyase superfamily signature 136 154 IPR000362 -
Bda11g00800 502 PRINTS Fumarate lyase superfamily signature 265 292 IPR000362 -
Bda11g00800 502 PRINTS Argininosuccinate lyase family signature 135 157 - -
Bda11g00800 502 PRINTS Argininosuccinate lyase family signature 265 289 - -
Bda11g00800 502 PRINTS Argininosuccinate lyase family signature 227 243 - -
Bda11g00800 502 PRINTS Argininosuccinate lyase family signature 344 363 - -
Bda11g00800 502 PRINTS Argininosuccinate lyase family signature 309 325 - -
Bda11g00800 502 PRINTS Argininosuccinate lyase family signature 176 196 - -
Bda11g00800 502 SUPERFAMILY L-aspartase-like 37 498 IPR008948 GO:0003824
Bda11g00800 502 Pfam Argininosuccinate lyase C-terminal 399 473 IPR029419 -
Bda11g00800 502 Pfam Lyase 40 334 IPR022761 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00800 K01755 argH, ASL; argininosuccinate lyase [EC:4.3.2.1] - jre:109003912 810.831
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g00456 Bda11g00800 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g01093 Bda-Chr4:61910617 Bda11g00800 Bda-Chr11:7952796 1.75E-11 dispersed
Bda11g00800 Bda-Chr11:7952796 Bda13g00791 Bda-Chr13:9371155 9.37E-151 dispersed
Bda11g00800 Bda-Chr11:7952796 Bda03g00456 Bda-Chr3:3948476 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g518 . Blo12g00732 . Bda03g00456 . . Bma04g00431 Bma01g02585 . Cmo12g00155 . . . Car12g00183 Sed01g4279 . Cpe07g00171 Bhi04g01383 Tan02g2479 Cmetu03g0752 . Hepe10g0432 . Lcy13g1481 . . . . . . . . . . . Lsi04g02280 Csa03g04493 Chy04g00207 . . . Bda11g00800 . . . . . Sed05g1560 . . Cma12g00201 . . . . . Bhi09g02498 Tan01g3852 Cmetu04g3041 . Hepe01g2170 Mch11g0709 . Cla11g01425 Cam11g1480 Cec11g1510 Cco11g1506 Clacu11g1641 Cmu11g1459 Cre11g1877 . . . Cme04g00237
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002720 2 2 1 3 1 1 2 2 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2 2 1 2 2 2 2 1 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00800 Bda_Chr11 FPKM 12.024684 14.199558 7.935836 8.495051 12.646146 13.033464 11.815264 15.120361 13.966351