Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00806 ATGTTCGGGCATTCCCAGCCCTTGAACTTGCATAATCAGATTCCTTCGGTTCCTGACGACGAAGAAGACGGCGCAGCCACCGACGGAATGGACAACACCCACATGCGCTTCGATTCTCACGCCTTAAAAGACGGTGCAGGGGCTGTCGGTGAGGATGTCGCATCCGACGGTTTGCACGTTTCTTCTGCTGGAGGGATGGAATTGGTGGCTCAACGTGGCGATGGTACGAGTCAGCTTTCGCTTTCATTTCGTGGCCAAGTTTATGTTTTTGACGCCGTCACACCTGATAAGGTTCAAGCAGTATTATTACTGTTGGGGGGATACGAGCTCTCTACGACTCAGCAAGGTGTGGAGATGACACATCAGAATCTAAGGAGTGTGATGGACTTCCCAAAGCGCTGTAGTCAACCACAGAGAGCTGCATCATTAAATAGGTTCAGGCAGAAAAGAAATGAGCGATGCTTTGATAAGAAAGTTAGATATAGCGTCCGTCAGGAAGTTGCCCTCAGGATGCAACGTGACAAAGGACAGTTTACTTCTGCTAAGAGGCCTGATGGAACTCATAGCTGGGATACTGTCCAAGGGTTGGGGCAAGTTGAAAGCCATGCAGAAACTTTATGCACACATTGTGGCACAAGCTCAAAAGGCACACCTATGATGCGGCGAGGTCCATCTGGACCAAGGTCTCTCTGCAACGCTTGTGGACTCTTTTGGGCAAACAGGGGTACTTTGAGAGATCTTTCTAAAAGAAACCAAGACCATCCTCTGTCCTTTCCAGAGCAGGTTGACTCTCCGGCAGGCTAG 804 49.75 MFGHSQPLNLHNQIPSVPDDEEDGAATDGMDNTHMRFDSHALKDGAGAVGEDVASDGLHVSSAGGMELVAQRGDGTSQLSLSFRGQVYVFDAVTPDKVQAVLLLLGGYELSTTQQGVEMTHQNLRSVMDFPKRCSQPQRAASLNRFRQKRNERCFDKKVRYSVRQEVALRMQRDKGQFTSAKRPDGTHSWDTVQGLGQVESHAETLCTHCGTSSKGTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRNQDHPLSFPEQVDSPAG 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7985592 7988797 + Bda005555.1 Bda11g00806 15914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00806 267 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 198 252 - -
Bda11g00806 267 Pfam CCT motif 139 181 IPR010402 GO:0005515
Bda11g00806 267 SMART GATA_3 201 254 IPR000679 GO:0006355|GO:0043565
Bda11g00806 267 ProSiteProfiles CCT domain profile. 139 181 IPR010402 GO:0005515
Bda11g00806 267 PANTHER GATA TRANSCRIPTION FACTOR 25 3 265 - -
Bda11g00806 267 Pfam GATA zinc finger 207 243 IPR000679 GO:0006355|GO:0043565
Bda11g00806 267 SMART tify_2 72 107 IPR010399 -
Bda11g00806 267 ProSiteProfiles GATA-type zinc finger domain profile. 201 252 IPR000679 GO:0006355|GO:0043565
Bda11g00806 267 CDD ZnF_GATA 207 253 IPR000679 GO:0006355|GO:0043565
Bda11g00806 267 ProSitePatterns GATA-type zinc finger domain. 207 234 IPR000679 GO:0006355|GO:0043565
Bda11g00806 267 ProSiteProfiles Tify domain profile. 72 107 IPR010399 -
Bda11g00806 267 Pfam tify domain 75 106 IPR010399 -
Bda11g00806 267 Gene3D - 198 255 IPR013088 GO:0006355|GO:0008270
Bda11g00806 267 MobiDBLite consensus disorder prediction 1 29 - -
Bda11g00806 267 PANTHER GATA TRANSCRIPTION FACTOR 28 3 265 IPR045280 GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda03g00450 Bda11g00806 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g01129 Bda-Chr6:40159870 Bda11g00806 Bda-Chr11:7985592 1.68E-86 dispersed
Bda11g00806 Bda-Chr11:7985592 Bda13g01362 Bda-Chr13:36128240 1.90E-71 dispersed
Bda11g00806 Bda-Chr11:7985592 Bda11g00807 Bda-Chr11:7991287 6.93E-63 tandem
Bda11g00806 Bda-Chr11:7985592 Bda03g00450 Bda-Chr3:3847408 3.55E-173 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16622 PF06203 CCT 5.40E-15 CL0281 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00806 - - pdul:117619919 346.28