Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00807 ATGACAGCTGCAAATCCTCAGCCTCTGCGTGCACGTCCTTTCGGGGATCGCATCCAAGAGTCTTTCCCGATTGAGGACGACGGTGAATGTGAAGATTCCGGTGGTGATGGTGACGATACGATGGACGCCGTTGAGGAGATTGGTGTGAATTCCGTGAGCGTTGCGAATCACAGTGGTATTGTAATGGCGTCCAGGACTAGTGAACTAACACTCTCCTTCGAAGGCGAGGTTTATGTGTTTCCTGCTGTAACCCCTGAAAAGGTGCAAGCTGTACTTCTGCTTCTCGGAGGACGTGAGGATGTCCCAACTGTTGTACCAACAACTGAAGTATCCGATGCTCAAAATTATAGGGTTTTAGGTGACAGCCCCCAAAAGCGCTCAAACCTGTCAAGAAGAATTGCCTCTTTGGTTAGATTCCGTGAAAAAAGGAAAGAGAGATGTTTTGAGAAGAAAATTAGATACGCTGTACGAAAAGAGGTTGCACAAAGGATGCATCGTAAGAATGGGCAGTTTGCATCCATGAAAGAAACCTCAAATGGTTCAAGTTTGGAGTCCATACAAGGCAACCTTCAAGATAGCACTCCTCCTCGTGAAACTGTCTTGCGAAGTTGTCAGCACTGCGGTGTTTCTGAAAGTAATACTCCTGCAATGCGACGCGGACCTGCTGGACCGAGGACTCTATGTAATGCTTGTGGTTTGATGTGGGCAAATAAGGGAACATTGAGAGATCTAAGCAAGGGAGGAAGGAGTCTTTTTCTGGATAATATTGAACCTGAAACAACAATGGACGTCAAGCCTGCAGTTGTAGATGGAGACCTCTCTGGCTATGAAGATAATCAGAAATCTCCAGAAGAATCTGGTAATCTAGTTGACAAAAGTTCCAGTGATCCTTCTCTCAATCAATACAATGAAGATCTGCGTGACTGCACCGACGAGTTTATTGATTCTTTTCCCGTGGAAATTGTACGTTCTTCGCTCAATGAAGACGAGCAGGACCCTCTGATTGGAATTCCTAGTGTTTCAGATACAGAGATAGTCGTCCCTGCAAGTTTTAATTAG 1059 45.51 MTAANPQPLRARPFGDRIQESFPIEDDGECEDSGGDGDDTMDAVEEIGVNSVSVANHSGIVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGREDVPTVVPTTEVSDAQNYRVLGDSPQKRSNLSRRIASLVRFREKRKERCFEKKIRYAVRKEVAQRMHRKNGQFASMKETSNGSSLESIQGNLQDSTPPRETVLRSCQHCGVSESNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRSLFLDNIEPETTMDVKPAVVDGDLSGYEDNQKSPEESGNLVDKSSSDPSLNQYNEDLRDCTDEFIDSFPVEIVRSSLNEDEQDPLIGIPSVSDTEIVVPASFN 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7991287 7995179 + Bda005556.1 Bda11g00807 15915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00807 352 MobiDBLite consensus disorder prediction 1 40 - -
Bda11g00807 352 Gene3D - 200 250 IPR013088 GO:0006355|GO:0008270
Bda11g00807 352 ProSiteProfiles CCT domain profile. 132 174 IPR010402 GO:0005515
Bda11g00807 352 MobiDBLite consensus disorder prediction 280 303 - -
Bda11g00807 352 Pfam GATA zinc finger 204 240 IPR000679 GO:0006355|GO:0043565
Bda11g00807 352 MobiDBLite consensus disorder prediction 25 40 - -
Bda11g00807 352 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 202 250 - -
Bda11g00807 352 SMART GATA_3 198 251 IPR000679 GO:0006355|GO:0043565
Bda11g00807 352 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 1 351 - -
Bda11g00807 352 SMART tify_2 62 97 IPR010399 -
Bda11g00807 352 PANTHER GATA TRANSCRIPTION FACTOR 28 1 351 IPR045280 GO:0006355
Bda11g00807 352 ProSitePatterns GATA-type zinc finger domain. 204 231 IPR000679 GO:0006355|GO:0043565
Bda11g00807 352 ProSiteProfiles Tify domain profile. 62 97 IPR010399 -
Bda11g00807 352 MobiDBLite consensus disorder prediction 263 303 - -
Bda11g00807 352 ProSiteProfiles GATA-type zinc finger domain profile. 198 246 IPR000679 GO:0006355|GO:0043565
Bda11g00807 352 MobiDBLite consensus disorder prediction 172 197 - -
Bda11g00807 352 CDD ZnF_GATA 203 250 IPR000679 GO:0006355|GO:0043565
Bda11g00807 352 Pfam tify domain 65 96 IPR010399 -
Bda11g00807 352 Pfam CCT motif 132 173 IPR010402 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00450 Bda-Chr3:3847408 Bda11g00807 Bda-Chr11:7991287 1.41E-64 dispersed
Bda09g00082 Bda-Chr9:1503115 Bda11g00807 Bda-Chr11:7991287 2.28E-07 dispersed
Bda11g00807 Bda-Chr11:7991287 Bda13g01362 Bda-Chr13:36128240 3.47E-144 dispersed
Bda11g00806 Bda-Chr11:7985592 Bda11g00807 Bda-Chr11:7991287 6.93E-63 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16623 PF06203 CCT 1.30E-13 CL0281 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00807 - - zju:107421329 432.95