Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda11g00807 | ATGACAGCTGCAAATCCTCAGCCTCTGCGTGCACGTCCTTTCGGGGATCGCATCCAAGAGTCTTTCCCGATTGAGGACGACGGTGAATGTGAAGATTCCGGTGGTGATGGTGACGATACGATGGACGCCGTTGAGGAGATTGGTGTGAATTCCGTGAGCGTTGCGAATCACAGTGGTATTGTAATGGCGTCCAGGACTAGTGAACTAACACTCTCCTTCGAAGGCGAGGTTTATGTGTTTCCTGCTGTAACCCCTGAAAAGGTGCAAGCTGTACTTCTGCTTCTCGGAGGACGTGAGGATGTCCCAACTGTTGTACCAACAACTGAAGTATCCGATGCTCAAAATTATAGGGTTTTAGGTGACAGCCCCCAAAAGCGCTCAAACCTGTCAAGAAGAATTGCCTCTTTGGTTAGATTCCGTGAAAAAAGGAAAGAGAGATGTTTTGAGAAGAAAATTAGATACGCTGTACGAAAAGAGGTTGCACAAAGGATGCATCGTAAGAATGGGCAGTTTGCATCCATGAAAGAAACCTCAAATGGTTCAAGTTTGGAGTCCATACAAGGCAACCTTCAAGATAGCACTCCTCCTCGTGAAACTGTCTTGCGAAGTTGTCAGCACTGCGGTGTTTCTGAAAGTAATACTCCTGCAATGCGACGCGGACCTGCTGGACCGAGGACTCTATGTAATGCTTGTGGTTTGATGTGGGCAAATAAGGGAACATTGAGAGATCTAAGCAAGGGAGGAAGGAGTCTTTTTCTGGATAATATTGAACCTGAAACAACAATGGACGTCAAGCCTGCAGTTGTAGATGGAGACCTCTCTGGCTATGAAGATAATCAGAAATCTCCAGAAGAATCTGGTAATCTAGTTGACAAAAGTTCCAGTGATCCTTCTCTCAATCAATACAATGAAGATCTGCGTGACTGCACCGACGAGTTTATTGATTCTTTTCCCGTGGAAATTGTACGTTCTTCGCTCAATGAAGACGAGCAGGACCCTCTGATTGGAATTCCTAGTGTTTCAGATACAGAGATAGTCGTCCCTGCAAGTTTTAATTAG | 1059 | 45.51 | MTAANPQPLRARPFGDRIQESFPIEDDGECEDSGGDGDDTMDAVEEIGVNSVSVANHSGIVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGREDVPTVVPTTEVSDAQNYRVLGDSPQKRSNLSRRIASLVRFREKRKERCFEKKIRYAVRKEVAQRMHRKNGQFASMKETSNGSSLESIQGNLQDSTPPRETVLRSCQHCGVSESNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRSLFLDNIEPETTMDVKPAVVDGDLSGYEDNQKSPEESGNLVDKSSSDPSLNQYNEDLRDCTDEFIDSFPVEIVRSSLNEDEQDPLIGIPSVSDTEIVVPASFN | 352 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 7991287 | 7995179 | + | Bda005556.1 | Bda11g00807 | 15915 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda11g00807 | 352 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - | |
Bda11g00807 | 352 | Gene3D | - | 200 | 250 | IPR013088 | GO:0006355|GO:0008270 | |
Bda11g00807 | 352 | ProSiteProfiles | CCT domain profile. | 132 | 174 | IPR010402 | GO:0005515 | |
Bda11g00807 | 352 | MobiDBLite | consensus disorder prediction | 280 | 303 | - | - | |
Bda11g00807 | 352 | Pfam | GATA zinc finger | 204 | 240 | IPR000679 | GO:0006355|GO:0043565 | |
Bda11g00807 | 352 | MobiDBLite | consensus disorder prediction | 25 | 40 | - | - | |
Bda11g00807 | 352 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 202 | 250 | - | - | |
Bda11g00807 | 352 | SMART | GATA_3 | 198 | 251 | IPR000679 | GO:0006355|GO:0043565 | |
Bda11g00807 | 352 | PANTHER | GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 | 1 | 351 | - | - | |
Bda11g00807 | 352 | SMART | tify_2 | 62 | 97 | IPR010399 | - | |
Bda11g00807 | 352 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 1 | 351 | IPR045280 | GO:0006355 | |
Bda11g00807 | 352 | ProSitePatterns | GATA-type zinc finger domain. | 204 | 231 | IPR000679 | GO:0006355|GO:0043565 | |
Bda11g00807 | 352 | ProSiteProfiles | Tify domain profile. | 62 | 97 | IPR010399 | - | |
Bda11g00807 | 352 | MobiDBLite | consensus disorder prediction | 263 | 303 | - | - | |
Bda11g00807 | 352 | ProSiteProfiles | GATA-type zinc finger domain profile. | 198 | 246 | IPR000679 | GO:0006355|GO:0043565 | |
Bda11g00807 | 352 | MobiDBLite | consensus disorder prediction | 172 | 197 | - | - | |
Bda11g00807 | 352 | CDD | ZnF_GATA | 203 | 250 | IPR000679 | GO:0006355|GO:0043565 | |
Bda11g00807 | 352 | Pfam | tify domain | 65 | 96 | IPR010399 | - | |
Bda11g00807 | 352 | Pfam | CCT motif | 132 | 173 | IPR010402 | GO:0005515 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda03g00450 | Bda-Chr3:3847408 | Bda11g00807 | Bda-Chr11:7991287 | 1.41E-64 | dispersed | |
Bda09g00082 | Bda-Chr9:1503115 | Bda11g00807 | Bda-Chr11:7991287 | 2.28E-07 | dispersed | |
Bda11g00807 | Bda-Chr11:7991287 | Bda13g01362 | Bda-Chr13:36128240 | 3.47E-144 | dispersed | |
Bda11g00806 | Bda-Chr11:7985592 | Bda11g00807 | Bda-Chr11:7991287 | 6.93E-63 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16623 | PF06203 | CCT | 1.30E-13 | CL0281 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda11g00807 | - | - | zju:107421329 | 432.95 |