Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00808 ATGGTTCCTAAGAGACATGCCGAGGAACATTTCTTTAACACTCACGCACCAGTACCCTGCTCACTCTGCAGTGTGACAGTAGAGCGTGAAATTTTAGCTATTCATAAAGGAGAAAATTGCCCCCAAAGGATTGTCACGTGTGAATTCTGTGAATTTCCGTTACCTGCAATAGATTTAGCTGAGCATCAGGAAGTATGTGGCAACCGGACAGAACTTTGTCATATGTGTCAGAGGTATATTAGACTGCGAGAAAGATACAACCATGAAAGTAGGTGCGGTGGTTTTACAGATAACATCGCTGGATCTTCCAGGGATGCGAGGGAAGTTGAAAGAGACCAAGGAGCTCGACGACGACAGCCTCGTGAGTTTTCGAAGAAACGGCTCATGTTCACTATTGCGATAACAGGAATAGCTGTTCTATTGGGGTCCCTATTTTTCCAGAGGAAAACAGAGATTAAGTAG 462 44.37 MVPKRHAEEHFFNTHAPVPCSLCSVTVEREILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHMCQRYIRLRERYNHESRCGGFTDNIAGSSRDAREVERDQGARRRQPREFSKKRLMFTIAITGIAVLLGSLFFQRKTEIK 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7995852 7997972 - Bda005557.1 Bda11g00808 15916

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00808 153 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 68 IPR013083 -
Bda11g00808 153 ProSiteProfiles Zinc finger TRAF-type profile. 6 50 IPR001293 GO:0008270
Bda11g00808 153 PANTHER XIAP-ASSOCIATED FACTOR 1-LIKE 1 151 - -
Bda11g00808 153 PANTHER TRAF-TYPE ZINC FINGER PROTEIN-RELATED 1 151 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00808 - - - tcc:18591842 271.166
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00808 Bda-Chr11:7995852 Bda15g00961 Bda-Chr15:17737912 3.64E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g546 . . . . Bpe02g00147 . . . . . Cma01g01467 Cma09g00598 . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00195 . . . Bda11g00808 . . . . . . Cmo01g01523 . . . . . . . Bhi09g02524 Tan01g3870 . . Hepe01g2183 Mch11g0723 . . . . . . . . . . . Cme04g00223
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003824 1 2 1 2 2 0 2 1 1 1 1 1 1 1 1 2 1 3 2 1 1 1 1 1 1 0 1 7 2 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00808 Bda_Chr11 FPKM 11.863413 13.252365 10.377048 12.451322 16.314842 17.737631 16.654373 17.487156 15.774624