Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00813 ATGGCCGCGCTTTCCAGAGAAAGAGCGCTTTATCTCCTCGCCACTGCCAACAACCACGGGGACTTATCGGTGAAGCTCTCTTCTCTTAGTCAGGTCAGGGATATTCTTTTGTCTATCGAGCCTTCTTATGCTGCAGAGATTTTCCCCTACTTGATCGAGCTCCAAGCGTCTCCCGAGAGTCTCGTTCGTAAATTGCTCATTGAGGTGATAGAAGATGTTGGGTTGAAAGCAGTGGAACAATCTTCTTTATTAATGTCCGTCTTACTCTTATTTTTAAATGATGGAAGCCCTGTTGTTGCAAGACAATCTATCATCAGTGGCACAAATTTGTTTTGCAGCGTGCTAGGGGAGATGGCGTTACAGTTTCACCGCTGGGGCAGAGTTGAAAGATGGCTTGAAGAGCTTTGGACGTGGATGATTAAGTTTAAAGATGCTGTTTTTGCAATAGCATTGGAGCCTGGCTCTATTGGGAAGCGGTTACTGGCATTGAAATTTTTAGAAACATATGTAATACTTGTCACATCTGAAGCAACTGATTCTGAAAAACCTGCATCAGAAGCTACAGAAAGAAGTAAACAAGCCTTTAATATTTCGTGGCTGGTTGGTGGATACCCTGTTTTGGATCCAGTGGTTCTTATGTCAGATGCAAATAGAACTATTAATATTCTGTTAAATTTATTGCGGTCAGCCAATAGTCTACCTGGGCCATTAACAATCACTGTTGTCAGTTGCCTGGCATCTATAGCAAGGAAGAGACCAGTTCACTACAATATGATTTTGTCTCAACTTCTTGATTTTGATCCGAACTTTGAGCCGATGAAAGGTTGTCATGCTCCCAGCATCCAGTACTCCTTAAGAACGGCCTTTTTAGGATTTCTCAGGTCTACTTATCCAACTATTGTGGAGTCAAGAGAGAGATTGTTGAGGGCTCTACGAGCTATGAATGCTGGAGATGCTGCTGATCAAGTGATTAGACAAGTTGGTAAAATGATCAAGGGTATGGATCGTGCATCTCGTGATGCTTGGTCAAACAAGGATGATGCACCATCAACTCAATTTCCTATCTTGGCGGATCTGTCTAGGAAAAGATTACTGCCTCCGGATAATGAAGAGCTTGCAAATGGCCACGAGATGCCTACAAGTTCCAAACACATACGCTTTGGCGCTGATATTAATCTAACTTCACAAGCTCAAACAAATGATATCATGGAGGATTCTATCTCTAATCATGGAGAGCCTCCTGATGTTCCAATGTTAGATGGTGCATTGACCCCTGTTGAGCAAATGATTGCCATGATTGGTGCCCTGCTTGCAGAAGGGGAGAGGGGAGCTGAATCACTGGAAATTCTTGTTTCACAAATTCATCCTGATATGTTGGCTGACATAGTCATAACTAATATGAAGCACTTGCCCAAGGCCCCTCCACCTTTGACGAGGCTTGGGGACTTGCCAACAGATCGACAAGCAAGTGTCCCAGGGCAGGTTGTAGGATCATCCGCTTCAAATGACTCTGTGCAGTCTCCAGTTCTTACTGCGCAGTTACCTGTTCCTTTGGGTACCGCAGGCACCTCATCTTTGTCTGACTCAACTACTGTCAGTATTCTGGATTCTAAACGAGATCCACGGAGGGATCCCCGTCGCCTTGATCCTCGGCGTGTAAAAGCGCCATCCATTTCTTCTTCAGAGGATGCTGGTTTAACGCAAACTGACGTCGATGGCTCCATCAGTAAAGCGGCTTCTGTGACAACAGTTGTCGAGATTCCTGCAACAGCTCTCCTTTCAAAATTAAGAAGTGAAGACAAAATCATGGAAAATACAATGGTGTCTGGGATTAACCAACTTACTCCGAAAATAGAGGTGCTGGAAGAATCTGAAGAAATAATCACGGTACTGGAGACAAATGCCTCTTCAGATCACATGCTTTCATCTGTTCAAGAAGTAAACAAAGAGTTACTTACTGCTAATTCAATCGAAAATCCAGTTACAAAAGCAGATGATATATCATCTTTTATGGATTCTGATCAGCATTCTCCATCTGTTTCAAACGCTTCTACATCTGAAGAAACCTGTCAAGAATTACCTTTACTTCCTTCATATGTTGAATTAACTTCAGATCAGCAAAGAAATGTAAAAATGTTGGCAGTTGAACGAATTATTGATTCATGTAAGAATTTATGTGGCATGGATTGGCAGCAACTGCATTCAGCATTACTTGCTCGTTTGTTTGCTCAGATTGATGCTGATGATAGTGTTGTTGGAATGCTGCAAAAACATGCTGTCCTGGATTATCAACAGCAAAGGGGTCATGAGCTTGTTCTTACATGTGTTATATCATCTGCATTCACTTGCGATTTCTGA 2358 42.71 MAALSRERALYLLATANNHGDLSVKLSSLSQVRDILLSIEPSYAAEIFPYLIELQASPESLVRKLLIEVIEDVGLKAVEQSSLLMSVLLLFLNDGSPVVARQSIISGTNLFCSVLGEMALQFHRWGRVERWLEELWTWMIKFKDAVFAIALEPGSIGKRLLALKFLETYVILVTSEATDSEKPASEATERSKQAFNISWLVGGYPVLDPVVLMSDANRTINILLNLLRSANSLPGPLTITVVSCLASIARKRPVHYNMILSQLLDFDPNFEPMKGCHAPSIQYSLRTAFLGFLRSTYPTIVESRERLLRALRAMNAGDAADQVIRQVGKMIKGMDRASRDAWSNKDDAPSTQFPILADLSRKRLLPPDNEELANGHEMPTSSKHIRFGADINLTSQAQTNDIMEDSISNHGEPPDVPMLDGALTPVEQMIAMIGALLAEGERGAESLEILVSQIHPDMLADIVITNMKHLPKAPPPLTRLGDLPTDRQASVPGQVVGSSASNDSVQSPVLTAQLPVPLGTAGTSSLSDSTTVSILDSKRDPRRDPRRLDPRRVKAPSISSSEDAGLTQTDVDGSISKAASVTTVVEIPATALLSKLRSEDKIMENTMVSGINQLTPKIEVLEESEEIITVLETNASSDHMLSSVQEVNKELLTANSIENPVTKADDISSFMDSDQHSPSVSNASTSEETCQELPLLPSYVELTSDQQRNVKMLAVERIIDSCKNLCGMDWQQLHSALLARLFAQIDADDSVVGMLQKHAVLDYQQQRGHELVLTCVISSAFTCDF 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8052143 8061208 + Bda005564.1 Bda11g00813 15921

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00813 785 MobiDBLite consensus disorder prediction 520 569 - -
Bda11g00813 785 SUPERFAMILY ARM repeat 15 271 IPR016024 -
Bda11g00813 785 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 1 774 - -
Bda11g00813 785 Pfam Symplekin/PTA1 N-terminal 97 322 IPR032460 -
Bda11g00813 785 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 1 774 - -
Bda11g00813 785 MobiDBLite consensus disorder prediction 535 553 - -
Bda11g00813 785 MobiDBLite consensus disorder prediction 475 508 - -
Bda11g00813 785 MobiDBLite consensus disorder prediction 520 534 - -
Bda11g00813 785 MobiDBLite consensus disorder prediction 491 508 - -
Bda11g00813 785 Gene3D - 1 343 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00813 K06100 SYMPK; symplekin - qsu:111988265 868.226
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00162 Bda-Chr1:23099951 Bda11g00813 Bda-Chr11:8052143 9.64E-59 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g565 Blo01g01788 . . . Bpe02g00153 . . Bma01g02573 . . Cma01g01458 . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00180 . . . Bda11g00813 . . . . . . Cmo01g01510 . . . . . . . Bhi09g02541 Tan01g3888 . . Hepe01g2195 Mch11g0740 . . . . . . . . . . . Cme04g00208
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004558 1 4 1 1 1 0 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 1 1 1 1 3 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00813 Bda_Chr11 FPKM 2.261361 2.363819 3.981297 3.936179 6.9085 6.902977 8.107144 2.158155 2.589586