Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00815 ATGGCGAATCCTCAGGCGCCGGGGCATCGGAGAGGCAGGGCAGCTCAGGCGCATCTCCCTGTGGTTCGTGGTAGGGTTCCGTTGAGAAAATTACTCCGAGTGACATCGGTGGCTTGTGGAATTCAATTCGGATGGGCTCTCCAGCTCTCTCTTTTGACCCCCTACGTGCAGCAGCTTGGAATTCCTCACGCATGGGCTAGCGTCATATGGCTTTGCGGACCTCTCTCTGGACTTTTGGTTCAGCCGCTTGTCGGCCACTTGAGCGACCGGTGCACGAGTCGGTTTGGCAGGCGGAGGCCTTTCATTGCCGCTGGAGCGGTGGCGATTATTATAGCTGTATTGGTAATCGGACATTCGGCGGACATCGGATGGTTGATCGGCGATAGAGGTAAGGTTAGGCCAGCTGCAGTGGCGACCTTTGTCCTCGGGTTTTGGATCCTTGATGTTGCCAATAACATGACGCAAGGACCCTGCAGGGCCCTACTTGCCGATCTTACCGGAAATGATCATCGGAGGACGCGGGTGGCTAATGCTTATTTTTCTCTTTTTATGGCTGTTGGCAATATTCTTGGTTTTGCTACTGGATCGTACAGTAAATGGTTCAAGATTTTCCCCTTTACTCTTACATCTGCGTGCAATGCAAGTTGTGCAAATCTCAAGGCAGCTTTTTATCTTGATGTTGTGTTCGTGGCAGTCACGACATATCTGAGCATATCTGCAGCTCAAGAATCAACTCTCACTCCGAGTGAGGGAGCAGCTCTAGTTGCTGGAGAAAGGTCAGAACAGGCGAGCAATTCTCAAGAAGCTTTCCTTTGGGAGCTTTTTGGCACATTTAGATACTTCTCAGGGTCCATATGGATCATTTTGTTGGTCACTGCACTGACCTGGATTGGTTGGTTTCCTTTTCTTCTCTTTGATACGGATTGGATGGGTAGAGAGATTTTTGGAGGTGAGCCAAATGAAGGGCTGAGTTATGACACTGGCGTTAGAGTTGGCGCACTTGGTTTGATGTTAAACTCGGTTGTTCTCGGAATAACTTCATTGCTTATGGAGAAGCTCTGCAGAAAGTGGGGGGCGGGTATTGTGTGGGGGGCATCAAACATCATCATGGCTCTTTGCTTTCTTGCAATGCTTGTTGTTACATTTATGGCAAAAGGATCAATCACTTACAGTGTTCCTTATGCCCTGATTTCAACACACATTGGTTCCCTCGGACTTGGACAGGGATTATGCATGGGGGTACTGAATCTAGCTATAGTAATTCCACAGGTTATAGTGTCCCTGGGAAGTGGACCATGGGATCAGCTGTTTGGAGGTGGAAACTCGCCAGCCTTTGCCGTGGCAGCCGTTGCAGCATTTGCTAGTGGACTTGTTGCCATATTGGTCATCCCTAAATCCGGTGCTCGGAAAGTTAGAGCACACACTTGA 1428 49.44 MANPQAPGHRRGRAAQAHLPVVRGRVPLRKLLRVTSVACGIQFGWALQLSLLTPYVQQLGIPHAWASVIWLCGPLSGLLVQPLVGHLSDRCTSRFGRRRPFIAAGAVAIIIAVLVIGHSADIGWLIGDRGKVRPAAVATFVLGFWILDVANNMTQGPCRALLADLTGNDHRRTRVANAYFSLFMAVGNILGFATGSYSKWFKIFPFTLTSACNASCANLKAAFYLDVVFVAVTTYLSISAAQESTLTPSEGAALVAGERSEQASNSQEAFLWELFGTFRYFSGSIWIILLVTALTWIGWFPFLLFDTDWMGREIFGGEPNEGLSYDTGVRVGALGLMLNSVVLGITSLLMEKLCRKWGAGIVWGASNIIMALCFLAMLVVTFMAKGSITYSVPYALISTHIGSLGLGQGLCMGVLNLAIVIPQVIVSLGSGPWDQLFGGGNSPAFAVAAVAAFASGLVAILVIPKSGARKVRAHT 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8075579 8078281 - Bda005566.1 Bda11g00815 15923

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00815 475 PANTHER SUCROSE/H+ SYMPORTER, PLANT, MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN-RELATED 11 386 - -
Bda11g00815 475 PANTHER SUCROSE/H+ SYMPORTER, PLANT, MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN-RELATED 387 473 - -
Bda11g00815 475 Gene3D MFS general substrate transporter like domains 28 463 IPR036259 -
Bda11g00815 475 CDD MFS_SLC45_SUC 31 442 - -
Bda11g00815 475 PANTHER SUGAR TRANSPORTER 11 386 - -
Bda11g00815 475 PANTHER SUGAR TRANSPORTER 387 473 - -
Bda11g00815 475 Pfam MFS/sugar transport protein 45 192 - -
Bda11g00815 475 TIGRFAM GPH_sucrose: sucrose/H+ symporter 26 385 IPR005989 GO:0005887|GO:0008515|GO:0015770
Bda11g00815 475 SUPERFAMILY MFS general substrate transporter 31 469 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00815 K15378 SLC45A1_2_4; solute carrier family 45, member 1/2/4 - jre:108981737 740.339
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda11g00815 Bda13g01439 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00815 Bda-Chr11:8075579 Bda13g01439 Bda-Chr13:37149760 2.10E-154 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g575 Blo01g01786 . . . Bpe02g00155 . . Bma01g02572 . Cmo12g00183 . . . Car12g00209 Sed08g1987 . Cpe07g00193 Bhi04g00897 Tan02g2516 Cmetu03g0103 . Hepe10g0399 . Lcy13g1450 Cla08g01190 Cam08g1654 Cec08g1231 Cco08g1350 Clacu08g1351 . Cre08g1137 . . . . . . . Cme03g01774 . . Bda11g00815 . . . . Bma02g00169 . . . Cma12g00228 . Car05g00514 . . . . . . . . . . . . . . . . . Lsi08g01052 Csa02g02236 Chy03g01280 .
Vvi18g1266 Blo01g01786 . . . Bpe02g00155 . . Bma01g02572 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00815 Bda13g01439 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda13g01439 BCT 17 492 Sucrose Transporter Gene Family AT1G22710 64.7 2.1e-177 619.0
Bda13g01438 . 13 504 Sucrose Transporter Gene Family AT1G22710 62.8 5.1e-176 614.4
Bda07g00816 . 17 450 Sucrose Transporter Gene Family AT1G22710 58.7 1.8e-144 509.6
Bda11g00815 BCT 28 464 Sucrose Transporter Gene Family AT1G22710 50.9 1.4e-136 483.4
Bda04g00635 . 17 409 Sucrose Transporter Gene Family AT1G22710 51.0 2.6e-124 442.6
Bda13g01439 BCT 9 477 Sucrose Transporter Gene Family AT2G14670 62.8 1.9e-172 602.4
Bda13g01438 . 12 489 Sucrose Transporter Gene Family AT2G14670 61.5 9.9e-169 590.1
Bda07g00816 . 8 450 Sucrose Transporter Gene Family AT2G14670 57.1 3.2e-143 505.4
Bda11g00815 BCT 13 464 Sucrose Transporter Gene Family AT2G14670 50.9 6.5e-136 481.1
Bda13g01439 BCT 10 400 Sucrose Transporter Gene Family AT1G66570 61.8 1.9e-142 502.7
Bda13g01438 . 13 408 Sucrose Transporter Gene Family AT1G66570 61.6 1.6e-141 499.6
Bda07g00816 . 15 406 Sucrose Transporter Gene Family AT1G66570 61.2 1.8e-140 496.1
Bda04g00635 . 15 356 Sucrose Transporter Gene Family AT1G66570 61.2 2.9e-122 435.6
Bda11g00815 BCT 24 414 Sucrose Transporter Gene Family AT1G66570 51.5 7.6e-115 411.0
Bda01g02166 . 155 611 Sucrose Transporter Gene Family AT2G02860 70.6 3.2e-185 644.8
Bda13g01439 BCT 5 477 Sucrose Transporter Gene Family AT5G06170 61.1 2.9e-160 562.0
Bda13g01438 . 18 489 Sucrose Transporter Gene Family AT5G06170 60.3 1.7e-157 552.7
Bda07g00816 . 5 450 Sucrose Transporter Gene Family AT5G06170 55.6 1.2e-134 476.9
Bda13g01439 BCT 9 477 Sucrose Transporter Gene Family AT5G43610 62.0 9.9e-169 590.1
Bda13g01438 . 12 489 Sucrose Transporter Gene Family AT5G43610 60.6 1.3e-165 579.7
Bda07g00816 . 9 450 Sucrose Transporter Gene Family AT5G43610 56.5 1.1e-140 496.9
Bda11g00815 BCT 22 464 Sucrose Transporter Gene Family AT5G43610 50.4 5.7e-132 468.0
Bda04g00635 . 16 356 Sucrose Transporter Gene Family AT5G43610 60.2 2.9e-120 429.1
Bda11g00815 BCT 23 470 Sucrose Transporter Gene Family AT1G09960 70.6 6.0e-193 670.6
Bda13g01439 BCT 12 482 Sucrose Transporter Gene Family AT1G09960 52.6 1.6e-137 486.5
Bda04g00635 . 11 356 Sucrose Transporter Gene Family AT1G09960 50.4 2.2e-99 359.8
Bda13g01439 BCT 10 491 Sucrose Transporter Gene Family AT1G71880 61.3 1.9e-170 595.9
Bda13g01438 . 13 503 Sucrose Transporter Gene Family AT1G71880 60.8 2.4e-170 595.5
Bda07g00816 . 10 450 Sucrose Transporter Gene Family AT1G71880 56.3 7.7e-140 494.2
Bda11g00815 BCT 27 464 Sucrose Transporter Gene Family AT1G71880 51.8 1.3e-131 466.8
Bda13g01439 BCT 10 492 Sucrose Transporter Gene Family AT1G71890 59.3 1.8e-165 579.3
Bda13g01438 . 13 504 Sucrose Transporter Gene Family AT1G71890 58.0 1.4e-162 569.7
Bda07g00816 . 15 450 Sucrose Transporter Gene Family AT1G71890 54.9 6.7e-136 481.1
Bda04g00635 . 15 394 Sucrose Transporter Gene Family AT1G71890 50.2 2.5e-122 436.0
Bda13g01439 BCT 10 491 Sucrose Transporter Gene Family AT1G71880 61.3 1.9e-170 595.9
Bda13g01438 . 13 503 Sucrose Transporter Gene Family AT1G71880 60.8 2.4e-170 595.5
Bda07g00816 . 10 450 Sucrose Transporter Gene Family AT1G71880 56.3 7.7e-140 494.2
Bda11g00815 BCT 27 464 Sucrose Transporter Gene Family AT1G71880 51.8 1.3e-131 466.8
Bda13g01439 BCT 17 492 Sucrose Transporter Gene Family AT1G22710 64.7 2.1e-177 619.0
Bda13g01438 . 13 504 Sucrose Transporter Gene Family AT1G22710 62.8 5.1e-176 614.4
Bda07g00816 . 17 450 Sucrose Transporter Gene Family AT1G22710 58.7 1.8e-144 509.6
Bda11g00815 BCT 28 464 Sucrose Transporter Gene Family AT1G22710 50.9 1.4e-136 483.4
Bda04g00635 . 17 409 Sucrose Transporter Gene Family AT1G22710 51.0 2.6e-124 442.6
Bda01g02166 . 155 611 Sucrose Transporter Gene Family AT2G02860 70.6 3.2e-185 644.8
Bda11g00815 BCT 23 470 Sucrose Transporter Gene Family AT1G09960 70.6 6.0e-193 670.6
Bda13g01439 BCT 12 482 Sucrose Transporter Gene Family AT1G09960 52.6 1.6e-137 486.5
Bda04g00635 . 11 356 Sucrose Transporter Gene Family AT1G09960 50.4 2.2e-99 359.8
Bda13g01439 BCT 10 492 Sucrose Transporter Gene Family AT1G71890 59.3 1.8e-165 579.3
Bda13g01438 . 13 504 Sucrose Transporter Gene Family AT1G71890 58.0 1.4e-162 569.7
Bda07g00816 . 15 450 Sucrose Transporter Gene Family AT1G71890 54.9 6.7e-136 481.1
Bda04g00635 . 15 394 Sucrose Transporter Gene Family AT1G71890 50.2 2.5e-122 436.0
Bda13g01439 BCT 9 477 Sucrose Transporter Gene Family AT5G43610 62.0 9.9e-169 590.1
Bda13g01438 . 12 489 Sucrose Transporter Gene Family AT5G43610 60.6 1.3e-165 579.7
Bda07g00816 . 9 450 Sucrose Transporter Gene Family AT5G43610 56.5 1.1e-140 496.9
Bda11g00815 BCT 22 464 Sucrose Transporter Gene Family AT5G43610 50.4 5.7e-132 468.0
Bda04g00635 . 16 356 Sucrose Transporter Gene Family AT5G43610 60.2 2.9e-120 429.1
Bda13g01439 BCT 10 400 Sucrose Transporter Gene Family AT1G66570 61.8 1.9e-142 502.7
Bda13g01438 . 13 408 Sucrose Transporter Gene Family AT1G66570 61.6 1.6e-141 499.6
Bda07g00816 . 15 406 Sucrose Transporter Gene Family AT1G66570 61.2 1.8e-140 496.1
Bda04g00635 . 15 356 Sucrose Transporter Gene Family AT1G66570 61.2 2.9e-122 435.6
Bda11g00815 BCT 24 414 Sucrose Transporter Gene Family AT1G66570 51.5 7.6e-115 411.0
Bda13g01439 BCT 9 477 Sucrose Transporter Gene Family AT2G14670 62.8 1.9e-172 602.4
Bda13g01438 . 12 489 Sucrose Transporter Gene Family AT2G14670 61.5 9.9e-169 590.1
Bda07g00816 . 8 450 Sucrose Transporter Gene Family AT2G14670 57.1 3.2e-143 505.4
Bda11g00815 BCT 13 464 Sucrose Transporter Gene Family AT2G14670 50.9 6.5e-136 481.1
Bda13g01439 BCT 5 477 Sucrose Transporter Gene Family AT5G06170 61.1 2.9e-160 562.0
Bda13g01438 . 18 489 Sucrose Transporter Gene Family AT5G06170 60.3 1.7e-157 552.7
Bda07g00816 . 5 450 Sucrose Transporter Gene Family AT5G06170 55.6 1.2e-134 476.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010988 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00815 Bda_Chr11 FPKM 131.318954 154.093094 201.474274 200.334991 63.987568 62.651867 66.158058 197.564758 196.629532