Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00816 ATGGCTGCTTCAATTACTCCGTCTAAGAGGCAGCTTGATCATAACTTTACGGTTTCCCATGGAAAAAGAAAGTGGCAAAAGTCATCAGGCGCTTTTTCACAAAATCAAATGAAGTTTGCATCTGGGAGCATTGTTTTACGTTTTCTATGCCCTGTTTCTAAATCAGGAAGCATTATTGGAAAAGGAGGCGTTACTATTACACAAATTCGTCAAGAAACAGGGGCAAAGGTGAAAATAGAGGACACTATTCCTGGTTGTGATGAAAGAATTGTTACTATTGTTGGCTCTGATCAAGAGGTTGTGGCCAATTCTGAGGATGATGAGGAGATTGCACGTGAAGAAGAAAACATGGAAGAGAAGGATGATAACGCTACTGAACCAAAAAAAGACCATGAAGATGAAGACTCTGTCGCAAAGAGTGATACAACGTCTGTTAAGGGAACATCATCTGTCCAGAGGGCTTTGTTACTTCTTTTTGAGAGATTGGTTCAAGGAGACGTAGATAATGAAGTTGGGCACGGAGAAAGTGAAAATTCATCTGCACGTGTCTTTAGGTTACTGGTGCTTTCCAGTCAAATTGGTTGCATTTTGGGTAAAGGTGGCTGTGTAATCAAGCAGATGGCGGCTGAAAGTGGTGCACAGATTAGGATCATTCCCAAGGATAAATTTCCTTCTTGCGCTTCAGGTGCAGGGGAATTAGTTCAGGTCAGCGGTGGAGTTGATGCAGTTAGGAGAGCTGTTAAATCTATTTCTCAGCAGCTCTTGGAGAACCATCGTGATAATGATTATTCGGCAACCAATATGCCAGAAAAATTACCCCACTCTAAGGCTGAAGCTTATGCCCTAGTCAATCATCCTCAAGGAGCATCTCATATTGGGCCTAATGATGATGCAGACAGTCAGTCTGCTGATCCCCACATTGCTTCTAAATTTCATGAAAGCAGTTTTTCTGACAGAATGAATACTTCGCCGGACACGCTTAGCTTTCGATTGTGGTGCCCAGCTGAGAGAGTGGGGGGTGTAATTGGAAAAGGAGGAACAATAATTAAAACCATACAGCAAGAGACCCACTGTGAGATTAGAGTTTTGGAAGGCGTTCCTGACTCCGAAGATCGGATTATCCTTGTCTCTGGAATTGCGCGTCCAGAAGAAAGAATATCTGCTGTGCAAGATGCCGTTCTTCATGTACAAAGTAGGATTGTCAAGGCTGTCCCAGATAGCAAGGAACAGAATGTGATGGCAAGGATTCTGGTTCCTTCCAATCAAATTGGTTGCCTGCTTGGAAAGGGTGGATCCGTCATAGCAGAAATGAGGAAGTCATCTACAGCGCATATCCGCATAATGGGAAAAGATCAGATTCCGAAGTGTGCTGCTGAAGATGAAGTAGTTCAGATAAATGGAGACTTTGATTCAGTTCAAGAGGCTCTTTTGCAGATAACTACTAGGTTGCAACAAAATTTTTTCCGTAATGCATTTCCTTCTATGAAATATTCTTCAAATCCAGCGTTGCTTGATCAAGGGCCTCCATTTCCTTCATTTATGGGAAGAAGAGAATTGTCACCTCCTGGAGTATTTTCCAACTTTGGCCCTACATTTGCCAAGTTTAATTCTGTTAGTGGCCTGGCCTCATATGGGAGTTTGCGTTCCCACGATGATCGACAAGCTTTTATACACAATATTCATAGACCAGGAATTCCTCCTTTCTTGTCTGACAGAAAGCCATGGGGCTCCCGGGGATTTGTAGAAGATGGTGGGCCATTAGGACTGCCTGATTTTGTGGGTGCCCCTCATAGAAGAATTGGTGGACTTGGAGGAGGTAGCCAATCAGCTATTATCACAAACACCACTGTTGAAGTTGTTGTACCTCACAGTCTTATTCCTGAAATATATGGAGAAGATGGTGAATGCTTAAGGCAAATTCGTCAGATTTCTGATGCAAAAATTACAATTACTGAAGCCAAGCCAGGAGCGGTTGAGACTGTCATTATAATTTCTGGAACACCAGAACAAACCCACGCCGCCCAGAGCTTAATTCAAGCATTTGTCATGTGTGGATCTGAGTCAAGTTGA 2070 43.0 MAASITPSKRQLDHNFTVSHGKRKWQKSSGAFSQNQMKFASGSIVLRFLCPVSKSGSIIGKGGVTITQIRQETGAKVKIEDTIPGCDERIVTIVGSDQEVVANSEDDEEIAREEENMEEKDDNATEPKKDHEDEDSVAKSDTTSVKGTSSVQRALLLLFERLVQGDVDNEVGHGESENSSARVFRLLVLSSQIGCILGKGGCVIKQMAAESGAQIRIIPKDKFPSCASGAGELVQVSGGVDAVRRAVKSISQQLLENHRDNDYSATNMPEKLPHSKAEAYALVNHPQGASHIGPNDDADSQSADPHIASKFHESSFSDRMNTSPDTLSFRLWCPAERVGGVIGKGGTIIKTIQQETHCEIRVLEGVPDSEDRIILVSGIARPEERISAVQDAVLHVQSRIVKAVPDSKEQNVMARILVPSNQIGCLLGKGGSVIAEMRKSSTAHIRIMGKDQIPKCAAEDEVVQINGDFDSVQEALLQITTRLQQNFFRNAFPSMKYSSNPALLDQGPPFPSFMGRRELSPPGVFSNFGPTFAKFNSVSGLASYGSLRSHDDRQAFIHNIHRPGIPPFLSDRKPWGSRGFVEDGGPLGLPDFVGAPHRRIGGLGGGSQSAIITNTTVEVVVPHSLIPEIYGEDGECLRQIRQISDAKITITEAKPGAVETVIIISGTPEQTHAAQSLIQAFVMCGSESS 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8093191 8097297 - Bda005567.1 Bda11g00816 15924

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00816 689 CDD KH-I 616 679 - -
Bda11g00816 689 Gene3D K Homology domain, type 1 408 486 IPR036612 GO:0003723
Bda11g00816 689 Gene3D K Homology domain, type 1 180 258 IPR036612 GO:0003723
Bda11g00816 689 ProSiteProfiles Type-1 KH domain profile. 181 250 - -
Bda11g00816 689 PANTHER KH DOMAIN-CONTAINING PROTEIN HEN4-LIKE 1 546 - -
Bda11g00816 689 PANTHER KH DOMAIN-CONTAINING PROTEIN HEN4-LIKE 618 674 - -
Bda11g00816 689 Coils Coil 103 123 - -
Bda11g00816 689 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 406 489 IPR036612 GO:0003723
Bda11g00816 689 Pfam KH domain 46 102 IPR004088 GO:0003723
Bda11g00816 689 Pfam KH domain 329 378 IPR004088 GO:0003723
Bda11g00816 689 Pfam KH domain 415 479 IPR004088 GO:0003723
Bda11g00816 689 Pfam KH domain 184 251 IPR004088 GO:0003723
Bda11g00816 689 Pfam KH domain 616 679 IPR004088 GO:0003723
Bda11g00816 689 MobiDBLite consensus disorder prediction 117 140 - -
Bda11g00816 689 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 614 682 IPR036612 GO:0003723
Bda11g00816 689 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 319 389 IPR036612 GO:0003723
Bda11g00816 689 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 178 257 IPR036612 GO:0003723
Bda11g00816 689 ProSiteProfiles Type-1 KH domain profile. 326 393 - -
Bda11g00816 689 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 1 546 - -
Bda11g00816 689 SMART kh_6 42 112 IPR004087 GO:0003676
Bda11g00816 689 SMART kh_6 180 255 IPR004087 GO:0003676
Bda11g00816 689 SMART kh_6 410 484 IPR004087 GO:0003676
Bda11g00816 689 SMART kh_6 613 683 IPR004087 GO:0003676
Bda11g00816 689 SMART kh_6 325 398 IPR004087 GO:0003676
Bda11g00816 689 CDD PCBP_like_KH 328 397 - -
Bda11g00816 689 ProSiteProfiles Type-1 KH domain profile. 411 479 - -
Bda11g00816 689 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 618 674 - -
Bda11g00816 689 CDD PCBP_like_KH 415 480 - -
Bda11g00816 689 MobiDBLite consensus disorder prediction 102 145 - -
Bda11g00816 689 ProSiteProfiles Type-1 KH domain profile. 614 678 - -
Bda11g00816 689 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 37 100 IPR036612 GO:0003723
Bda11g00816 689 Gene3D K Homology domain, type 1 40 105 IPR036612 GO:0003723
Bda11g00816 689 CDD PCBP_like_KH 183 251 - -
Bda11g00816 689 Gene3D K Homology domain, type 1 325 403 IPR036612 GO:0003723
Bda11g00816 689 MobiDBLite consensus disorder prediction 102 116 - -
Bda11g00816 689 ProSiteProfiles Type-1 KH domain profile. 43 108 - -
Bda11g00816 689 Gene3D K Homology domain, type 1 612 684 IPR036612 GO:0003723
Bda11g00816 689 CDD PCBP_like_KH 45 96 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00816 K21444 PCBP3_4; poly(rC)-binding protein 3/4 - qsu:112004419 845.499
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01230 Bda-Chr1:47660193 Bda11g00816 Bda-Chr11:8093191 2.65E-72 dispersed
Bda10g00905 Bda-Chr10:43480752 Bda11g00816 Bda-Chr11:8093191 9.41E-09 dispersed
Bda11g00816 Bda-Chr11:8093191 Bda14g01576 Bda-Chr14:33167603 2.18E-73 dispersed
Bda11g00816 Bda-Chr11:8093191 Bda07g01349 Bda-Chr7:16301662 8.26E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g580 Blo01g01784 . . . Bpe02g00157 . . Bma01g02568 . . . Cma09g00613 . . . Cpe06g00474 . . . . . . . . . . . . . . . Cone4ag1264 Cone7ag0879 . . Lsi04g02311 Csa03g04530 Chy04g00173 . . . Bda11g00816 . . . . . Sed05g1523 Cmo01g01505 Cmo09g00601 . . . Car09g00545 . Cpe02g00498 Bhi09g02548 Tan01g3895 Cmetu04g0312 . Hepe01g2200 . . Cla11g01461 Cam11g1513 Cec11g1551 Cco11g1546 . Cmu11g1494 Cre11g1915 . . . Cme04g00201
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007521 1 1 1 1 1 0 3 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00816 Bda_Chr11 FPKM 18.436943 21.517797 190.515244 194.131149 770.135376 699.693909 771.542664 16.714003 17.211292