Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda11g00829 | ATGAGTTCGGAAGAAAATGAGAGCAGCTCGTACTCATTCTTATCGACATCTTCAACAGGTCAATCCCTTCAGAGCTCGGACCCTAAGAAGGCTAAGCGAATACGAGACTCGAGCAAGCACCCAATCTACCGAGGTGTTCGAATGAGAAATTGGGGCAAATGGGTTTCTGAAATTCGGGAACCCCGAAAGAAATCTCGCATTTGGCTCGGAACCTTCCCTACCCCTGAAATGGCTGCGAGAGCACACGACGTGGCTGCTTTAAGCATCAAAGGTAGCTCTGCTATTCTCAACTTCCCTGAACTCGCAGATTCCCTTCCTCGTCCGGTCTCCATCGCTCGCCGGGACGTTCAAGCGGCTGCGGCAAAGGCTGCTCAGATGGAGAAATTTGACTCTCCCCCGTCAATGTCAGTTTCTATGACGATGTCTTCATCGGCTTCTTCGCTGTCGTCGCTGGTTTCTGCGATGGATTTGTCGTCTCCAGCAACGAATGAGTCAGAAGAGTTGAGCGAGATCCTGGAATTGCCGAGTCTGGGGAAGGAGTATGAGTCGCACCAGTTGAGCAGTGAGTTTGCGTTTTTCGACTCCAATGATGGGTGGGCTTATCCAACGCCATGGTTGCAGAGTATAGACGAGTATGAATATGACAACAAAGTGAAGGATGAGATGGGAGTCGGAGACTGTAACGAGTACGTTCTCTGGCATTACTGA | 708 | 50.28 | MSSEENESSSYSFLSTSSTGQSLQSSDPKKAKRIRDSSKHPIYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGSSAILNFPELADSLPRPVSIARRDVQAAAAKAAQMEKFDSPPSMSVSMTMSSSASSLSSLVSAMDLSSPATNESEELSEILELPSLGKEYESHQLSSEFAFFDSNDGWAYPTPWLQSIDEYEYDNKVKDEMGVGDCNEYVLWHY | 235 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 8213516 | 8214223 | - | Bda005580.1 | Bda11g00829 | 15937 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda11g00829 | 235 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 7 | 216 | - | - | |
Bda11g00829 | 235 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Bda11g00829 | 235 | CDD | AP2 | 41 | 101 | IPR001471 | GO:0003700|GO:0006355 | |
Bda11g00829 | 235 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE | 7 | 216 | - | - | |
Bda11g00829 | 235 | SMART | rav1_2 | 42 | 105 | IPR001471 | GO:0003700|GO:0006355 | |
Bda11g00829 | 235 | SUPERFAMILY | DNA-binding domain | 42 | 100 | IPR016177 | GO:0003677 | |
Bda11g00829 | 235 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Bda11g00829 | 235 | Pfam | AP2 domain | 41 | 91 | IPR001471 | GO:0003700|GO:0006355 | |
Bda11g00829 | 235 | Gene3D | AP2/ERF domain | 42 | 100 | IPR036955 | GO:0003700|GO:0006355 | |
Bda11g00829 | 235 | ProSiteProfiles | AP2/ERF domain profile. | 42 | 99 | IPR001471 | GO:0003700|GO:0006355 | |
Bda11g00829 | 235 | PRINTS | Ethylene responsive element binding protein signature | 43 | 54 | IPR001471 | GO:0003700|GO:0006355 | |
Bda11g00829 | 235 | PRINTS | Ethylene responsive element binding protein signature | 65 | 81 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda11g00829 | Bda-Chr11:8213516 | Bda11g01093 | Bda-Chr11:10692654 | 5.37E-56 | dispersed | |
Bda01g00937 | Bda-Chr1:42745157 | Bda11g00829 | Bda-Chr11:8213516 | 3.78E-67 | wgd | |
Bda11g00829 | Bda-Chr11:8213516 | Bda13g01332 | Bda-Chr13:35584239 | 1.02E-82 | wgd | |
Bda11g00829 | Bda-Chr11:8213516 | Bda03g00430 | Bda-Chr3:3710423 | 6.80E-102 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16626 | PF00847 | AP2 | 6.90E-14 | CL0081 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda11g00829 | K09286 | - | tcc:18587975 | 248.44 |