Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00829 ATGAGTTCGGAAGAAAATGAGAGCAGCTCGTACTCATTCTTATCGACATCTTCAACAGGTCAATCCCTTCAGAGCTCGGACCCTAAGAAGGCTAAGCGAATACGAGACTCGAGCAAGCACCCAATCTACCGAGGTGTTCGAATGAGAAATTGGGGCAAATGGGTTTCTGAAATTCGGGAACCCCGAAAGAAATCTCGCATTTGGCTCGGAACCTTCCCTACCCCTGAAATGGCTGCGAGAGCACACGACGTGGCTGCTTTAAGCATCAAAGGTAGCTCTGCTATTCTCAACTTCCCTGAACTCGCAGATTCCCTTCCTCGTCCGGTCTCCATCGCTCGCCGGGACGTTCAAGCGGCTGCGGCAAAGGCTGCTCAGATGGAGAAATTTGACTCTCCCCCGTCAATGTCAGTTTCTATGACGATGTCTTCATCGGCTTCTTCGCTGTCGTCGCTGGTTTCTGCGATGGATTTGTCGTCTCCAGCAACGAATGAGTCAGAAGAGTTGAGCGAGATCCTGGAATTGCCGAGTCTGGGGAAGGAGTATGAGTCGCACCAGTTGAGCAGTGAGTTTGCGTTTTTCGACTCCAATGATGGGTGGGCTTATCCAACGCCATGGTTGCAGAGTATAGACGAGTATGAATATGACAACAAAGTGAAGGATGAGATGGGAGTCGGAGACTGTAACGAGTACGTTCTCTGGCATTACTGA 708 50.28 MSSEENESSSYSFLSTSSTGQSLQSSDPKKAKRIRDSSKHPIYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGSSAILNFPELADSLPRPVSIARRDVQAAAAKAAQMEKFDSPPSMSVSMTMSSSASSLSSLVSAMDLSSPATNESEELSEILELPSLGKEYESHQLSSEFAFFDSNDGWAYPTPWLQSIDEYEYDNKVKDEMGVGDCNEYVLWHY 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8213516 8214223 - Bda005580.1 Bda11g00829 15937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00829 235 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 216 - -
Bda11g00829 235 MobiDBLite consensus disorder prediction 1 41 - -
Bda11g00829 235 CDD AP2 41 101 IPR001471 GO:0003700|GO:0006355
Bda11g00829 235 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 7 216 - -
Bda11g00829 235 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Bda11g00829 235 SUPERFAMILY DNA-binding domain 42 100 IPR016177 GO:0003677
Bda11g00829 235 MobiDBLite consensus disorder prediction 1 27 - -
Bda11g00829 235 Pfam AP2 domain 41 91 IPR001471 GO:0003700|GO:0006355
Bda11g00829 235 Gene3D AP2/ERF domain 42 100 IPR036955 GO:0003700|GO:0006355
Bda11g00829 235 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Bda11g00829 235 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Bda11g00829 235 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00829 Bda-Chr11:8213516 Bda11g01093 Bda-Chr11:10692654 5.37E-56 dispersed
Bda01g00937 Bda-Chr1:42745157 Bda11g00829 Bda-Chr11:8213516 3.78E-67 wgd
Bda11g00829 Bda-Chr11:8213516 Bda13g01332 Bda-Chr13:35584239 1.02E-82 wgd
Bda11g00829 Bda-Chr11:8213516 Bda03g00430 Bda-Chr3:3710423 6.80E-102 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16626 PF00847 AP2 6.90E-14 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00829 K09286 - tcc:18587975 248.44