Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00845 ATGAATCATAAAGAGAGCCTATCTGGTGTTGACACGTGGAAAAATACTCCGTTTTCGGTAAATCCATCATCAAATGAGATTCCCCCGGATCATGCATCTTTTTCCGATATCAGCTCACTAAATCAGCAGAAATGGGAAGACTCTGATATTTTCGATTATGATGTTGGCATGGAGTCACAGTTTCAAGAATATAATCAAGCTTCAGAATCTCAATCTTCACTCTCCTGCAAACCGAACGATGAAGCAAAAATCTTGGAGAAAGTGGACGATCAAATGATGGAATTGGAGACACTCGAAACTTATAAATCACAAGATTGGGATCCAAGAGCAATGCTGAATAATCTTTCTTTCTTAGAACAAAAAATTCATCACCTCCAAGATTTAGTGCATGTAATTGTTGGTCAGAGAAGACAGGTTGTAGGACAGTCGAACGAGCTTATGTTTCAGCAGCAGCAGCTCATAACGGCTGATCTTACTTCAATTATAATTCAGCTGGTCTCTACAGCAGGCAGCCTCCTCCCGACAGCTAGGAACCTTTCCTCCATTAATCCGTCAATTGAGCAGCTTGGTTCACTCGATGATGTTTTTATCCCGGCTGACGGCTGTAAATTTCCCGAGCTGAGCCACCAGATCGACCAAATGGGTAATGATAGCAATGAGCCGAAATTCAGTATCGAAGAACACGATTTGAAAGACGAGGAAGATGCCGACGAAGGGGAGAATCTCCCCATTGGTTCGTATGAAATTTTGCAACTCGAGAAAGAGGAAATCCTCGCACCTCACACTCATTTTTGCACGATATGCGGGAAGGGATTCAAAAGGGATGCAAATTTACGCATGCACATGAGGGGCCATGGAGACGAGTATAAAACTCCGGCTGCTCTGGCAAAACCCGTCAAAGAACCGAGCTCTGAATCTGTGCTGATCAAGAGGTATTCTTGCCCATATAATGGGTGTAAGAGAAATAGAGATCATAAAAAGTTCCAGCCTTTGAAGACTATTTTATGTGTCAAAAACCACTACAAGAGAACTCACTGTGACAAGAGCTACACCTGCAGCAAATGCAACACCAAGAAATTTTCAGTCATTGCCGATCTCAAAACGCACGAGAAGCATTGCGGGAAGGATAAGTGGTTGTGTTCTTGCGGGACGACTTTCTCAAGGAAAGACAAGCTTTTTGGGCATATCGCTCTCTTCCAAGGCCATACTCCTGCTATCATGATTGAAGAGTCGAAAGGAATGGTGGGGCCCAATGATCAAGTCGATAATATTGTATCGACAAACAGAGTCGGGAGTGCAAATTTCAATTTCGGGTCAATGTCGTCCATGGGAAATGAAGTCGAAAACATGATTGATGTGAAAGGTGTTGATGATCCGACTAGCTATTACTCACCTCTGAATTTCGATCCATGTAGTATTCCCGGGTTTCATGAATTCCCTCGACCCCCGTTTAATGATTCGGAGAGTTCGTTTTCTTATCTCCTCCAAGGGTCTAAAGTGAAGCACTAG 1509 43.21 MNHKESLSGVDTWKNTPFSVNPSSNEIPPDHASFSDISSLNQQKWEDSDIFDYDVGMESQFQEYNQASESQSSLSCKPNDEAKILEKVDDQMMELETLETYKSQDWDPRAMLNNLSFLEQKIHHLQDLVHVIVGQRRQVVGQSNELMFQQQQLITADLTSIIIQLVSTAGSLLPTARNLSSINPSIEQLGSLDDVFIPADGCKFPELSHQIDQMGNDSNEPKFSIEEHDLKDEEDADEGENLPIGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPVKEPSSESVLIKRYSCPYNGCKRNRDHKKFQPLKTILCVKNHYKRTHCDKSYTCSKCNTKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIMIEESKGMVGPNDQVDNIVSTNRVGSANFNFGSMSSMGNEVENMIDVKGVDDPTSYYSPLNFDPCSIPGFHEFPRPPFNDSESSFSYLLQGSKVKH 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8325063 8326571 + Bda005596.1 Bda11g00845 15953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00845 502 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 44 496 - -
Bda11g00845 502 SUPERFAMILY beta-beta-alpha zinc fingers 261 288 IPR036236 -
Bda11g00845 502 SMART c2h2final6 312 345 IPR013087 -
Bda11g00845 502 SMART c2h2final6 263 285 IPR013087 -
Bda11g00845 502 SMART c2h2final6 350 372 IPR013087 -
Bda11g00845 502 MobiDBLite consensus disorder prediction 1 30 - -
Bda11g00845 502 ProSitePatterns Zinc finger C2H2 type domain signature. 265 285 IPR013087 -
Bda11g00845 502 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 44 496 IPR044300 GO:0010044|GO:0010447
Bda11g00845 502 Gene3D Classic Zinc Finger 247 315 - -
Bda11g00845 502 ProSiteProfiles Zinc finger C2H2 type domain profile. 263 290 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00096 Bda-Chr4:2079616 Bda11g00845 Bda-Chr11:8325063 4.21E-72 dispersed
Bda09g00222 Bda-Chr9:3048395 Bda11g00845 Bda-Chr11:8325063 4.74E-80 dispersed
Bda11g00677 Bda-Chr11:6795926 Bda11g00845 Bda-Chr11:8325063 2.82E-26 dispersed
Bda11g00845 Bda-Chr11:8325063 Bda12g01070 Bda-Chr12:42429856 1.49E-26 dispersed
Bda11g00845 Bda-Chr11:8325063 Bda09g00221 Bda-Chr9:3046297 2.98E-81 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16628 None None None None Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00845 - - vvi:100248677 671.389