Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00850 ATGTCTTTGAGTTCTAAAGAAGGAAGTGCTAGCTTTAAACTTAGAGAGGAGAAACTAAGAGTAATGCAGGAGGTTTATAATGGGCGGTTCAGGGATATCGTATGTCAACTTTTTCAATCTTTTGGAGTTGCTTCAACGGATGAAGATGGTGAAAATTGGGCGGACATTGTTGGTTCCTTGTCTTGGGAAGCTGCTTCGTTTTTGAAGCCTAACATCTCTGATGGCAAAGCAATGGATCCTGATGGCTACGTAAAAGTTAAATGTGTTGCCATGGGATCTCGCAGCCAAAGTCAATTTATCAAGGGCTTGGTCTTCAAAAAGCATGCATCTCACAAGCATATGCCAACTAAATTTAAAAACCCAAAGCTGCTATTGATCAAAGGAGCGCTTGGGCTGTCTTCAAACGGGTTGCTATCGCTTAATGCAATGGAGCAGGAAATGGATCATGAGAAATCTATAATTGAGATGATTGAATTTTGCCAACCGAATGTGATTTTAGTTGAAAAAACGGTCTCTCGTGATATCCAAGAATCTATTCTCCAGAAAGGAATGACGCTTGTTCTTGAGATGAAGCTCCAGCGCTTGGAAAGAATTGCTCGTTGTACTGGTTCACCAATCTTATCTTCTGATACGATGATGAGTCACAGGCTAAAGCATAGTGACACTTTTTGCTTTGAAAAATGTGTAGAAGAACACGTCAGATTTTCCGACGGTGGAAAGCGTTCATGTAAAACATTAATGTTCATTGAGGGCTGCCCTACACGTCGGGGTTGTACGATTTTGCTGAAAGGATCGCATAGTGATGAATTGAAGAGGATTAAGTGCATAGTCCGTTGTGCAGTTGCCATTGCCCATCATTTGATACTTGAAACTTCATTCCTTGTTGACCAGAGTGCTATGTTTACCACCATACCTTTTGTGGGTGTGCCAGAATTTATGCCACTCGATCAGCGGTTCCCTGACTTGGTGCGTTGTAGTTCAACTGCATCTCGACTTGAGGAGGCGGCTGACAAAAGTGTTCAATCTTCTGTCGATATTCCCACTGCCACTGGGTTCCAACGACATTCTGAAGAATCAAACTTGGATATGGAAAGCGATTTGGCAATTTGTCACGAACCATATAATCCACTATTTTTTTCTGGTTTTACTTCTCTGTCACAATCGCTTAAAAAGGTTATCCGAGACATTCCTCTTGCCTCCTCTTATTCATCTCTATCATCTTATTTGGGATTTTATGGAGAAAGACCTGATGATCCGATCTCAGAACCTATTTCCATTCCAATTGTGACAGAGGCAGATCATAGTGGTAATGAAAGGAAAGATGCTTGTGATGAAGAGAAGCCGGTTGAAGATGTACAACTCCGGCCTTCACCTGCATTCCCTGAAAGACCAACTGAGGTGGAAAAGTCCTTTGGGTATGTTGAGGAACATAGAAAGAGAGAGGACAATGCCAACAGCGAATCTAATTCTCAGAGTATTTTAGTTTTGATGTCAAGCCGAAATTTCTTGCGAGGATCGATATGCGAACAAAGCCATTTTTCCCACATCGTGTTCTACAAAAATTTTGATATTCCACTTGGAAAATTTCTACGGGAATCTTTATTAAATCAGAAAAACCAGTGCAGTTCATGTGGGGAACCACCTGGAGCTCATTTCTACTACTATGCTCATAATAACAAGCAACTAACAGTCCAAGTCCGACAGATATCAAGAGGTAAGTTCTTACCGGGGGAAAAGGAAGGGAAACTTTGGATGTGGAGTCGTTGTGGTAATTGTAAATCGACTAAAGGAACTTCTAATTATACCAAAAGGGTGGTGATTTCACCCGCTGCACGAGGTTTGTCATTCGGAAAGTTCCTTGAGCTCAGTTTCTCTCACTATTCTTCATGCAGTAAATTGTCCAGCTGTGGTCATTCATTGTACAGGGACTTCCTCTACTTCTTTGGATTGGGCCCCATGGTTGCTATGTTCAAATATTCTCAGGTTCCAACATATACTGTGTCTGTTCCTCCTCGGAAGCTGGAGTACAGCAATTTAGTCAGACAAGAGAAACTTGTCAAATTAACTCAAGATGTGTATATGAAAGGGATGCTGCTGTTCATGGAGGTTGAAAACTCTTTGAAAAAGATCAGATCTGAACTCAAAAGCTCGACTTTGAATCTTCAGGGCTCACCAAAAGAGCTTTCTATTGTTGAAGAGATGCTAAAGAGGGAGAGATTTGAATTTGAGGTGAACATTCATAATACACTCACTGATGATGGGAATCCTGATCCTGTCCACAAGTTTCTCCTCATTAATCGACTTCTCTGGGAACGTTTGCTGGAATCCTGCGTTTGGGACCGTCGCCTTGCTTCGCTGCTTTCACCTGGTTCTCTGATTTACTTTTCCGCGGCCGAAAAAGAATTGCTAGAACCAGTTAGAAGAAATGAAGGGACAGAACTTATGGGACAAAATGACGATATGGGAAGTGATGGTAATGCCCAATCAGCAATTGAGCTAGAGAAATCATTAGAGCAAAATGAACCTATAGATACAACTTCGTCATCGGATTATTGTAGTCAGCAGAATGACAATTTTCCGTTTGACAGTTTAGATGCATCGAGAGAAGGAATTTATCTGAATAAATGGCTATCCAACTTAGGGGCTTCGAACGAGTGGGTCTGGGCACCATTTTCAGAGATTCGGATGGTAAATATGAAGGACATTAAGAGAAATTATATACCTAAATTTGAAACTGTAAGTACCCATACGGCGGAGTATTTACCCACGGCATACCATCTAATAACTCAAGAAGGATCCAGGCTTCACATTCCTCTTGCGACTGACAGTCATATTGTGTCGGATTATGAGGGCGAACTCTCGAGCATTGTCGCTTGTGTTTTAGCAACGTTGTACGATCTGCCTATCCAAACAGAAATTTCAGATCAGGAAAATGGCGAACTCAGACCTTCTGCTAAATCGTTTGATAATTTACGCAGCCTGAATCGATTTCCTTCAAATGGATCTTCAGAGTCAGATTCAGTACATTCTTCTGAAAGTTTGAGGTTCTTCAGTTTTGATGGGTTGAATCTGCTTGATTCTCTTGTTCCGGAGACTTTTAAATCGGCAGATCCCGACGGCATCATACGATCACTGGCAAAGGGTAAATATGTTGTTAATTGCCCATATTTCGTTCAGTTTCGTAATCTTCGGAGCCAGTGCTGTCCTTCCGAGTCGCATTACATAGCCTCTCTGAGCCGCTGTAGAAATTGGGAAGCTCAAGGCGGAAAAAGCAAATCTTTTTTTGCTAAAACACTTGATGACAGGTTTATTGTAAAGGAGATTAAGAAGACAGAATATGATTCCTTCATGGAGATTGCACCTGATTATTTCAACTATATGAATCAGTCATTTGAATTGGGGAATCAAACTTGCCTGGCCAAAGTTCTTGGGATTTATCAGGTTATGGTTAGACAGACAAAAAGTGGAAAGGAGATGAGACATGATCTAATGGTGATGGAGAATCTTACATTTGGTTGGAAAATTTGTCGTCAGTACGATCTTAAAGGAGCCCTTCATGCTCGATTCAATTCAGTTGCCAGCGACGTACTTCTCGATCAGAATTTCGTCAATGACATGAATTCATCGCCATTGTATGTCAGTAACCAAGCGAAGCGAATCTTGGAAAGGGCTGTCTGGAATGATACAACTTTCCTCAATTCTATAAATGTGATGGACTATTCTTTACTTGTCGGAGTCGATGCTGAAAGGCGAGTACTAGTATGCGGAATTATCGATTATCTAAGGCAATATACATGGGACAAGCATCTGGAGACATGGGTAAAATCTTCGCTTGTTCCTAAGAATGTTTTGCCGACGGTTATATCTCCGAAAGAGTACAAAAGGAGATTCAGAAAGTTCATGTCGACCCATTTCCTGAGCGTCCCCGATCAATGGTGCACGCAGAAGAGTGATTCTGACGACCCGTGTAGACTTTGTGGCGGCAGAGAAGATGATTTAGGCAAAGGTGAACAAACTGTTTGTACTTCTTGA 4032 41.52 MSLSSKEGSASFKLREEKLRVMQEVYNGRFRDIVCQLFQSFGVASTDEDGENWADIVGSLSWEAASFLKPNISDGKAMDPDGYVKVKCVAMGSRSQSQFIKGLVFKKHASHKHMPTKFKNPKLLLIKGALGLSSNGLLSLNAMEQEMDHEKSIIEMIEFCQPNVILVEKTVSRDIQESILQKGMTLVLEMKLQRLERIARCTGSPILSSDTMMSHRLKHSDTFCFEKCVEEHVRFSDGGKRSCKTLMFIEGCPTRRGCTILLKGSHSDELKRIKCIVRCAVAIAHHLILETSFLVDQSAMFTTIPFVGVPEFMPLDQRFPDLVRCSSTASRLEEAADKSVQSSVDIPTATGFQRHSEESNLDMESDLAICHEPYNPLFFSGFTSLSQSLKKVIRDIPLASSYSSLSSYLGFYGERPDDPISEPISIPIVTEADHSGNERKDACDEEKPVEDVQLRPSPAFPERPTEVEKSFGYVEEHRKREDNANSESNSQSILVLMSSRNFLRGSICEQSHFSHIVFYKNFDIPLGKFLRESLLNQKNQCSSCGEPPGAHFYYYAHNNKQLTVQVRQISRGKFLPGEKEGKLWMWSRCGNCKSTKGTSNYTKRVVISPAARGLSFGKFLELSFSHYSSCSKLSSCGHSLYRDFLYFFGLGPMVAMFKYSQVPTYTVSVPPRKLEYSNLVRQEKLVKLTQDVYMKGMLLFMEVENSLKKIRSELKSSTLNLQGSPKELSIVEEMLKRERFEFEVNIHNTLTDDGNPDPVHKFLLINRLLWERLLESCVWDRRLASLLSPGSLIYFSAAEKELLEPVRRNEGTELMGQNDDMGSDGNAQSAIELEKSLEQNEPIDTTSSSDYCSQQNDNFPFDSLDASREGIYLNKWLSNLGASNEWVWAPFSEIRMVNMKDIKRNYIPKFETVSTHTAEYLPTAYHLITQEGSRLHIPLATDSHIVSDYEGELSSIVACVLATLYDLPIQTEISDQENGELRPSAKSFDNLRSLNRFPSNGSSESDSVHSSESLRFFSFDGLNLLDSLVPETFKSADPDGIIRSLAKGKYVVNCPYFVQFRNLRSQCCPSESHYIASLSRCRNWEAQGGKSKSFFAKTLDDRFIVKEIKKTEYDSFMEIAPDYFNYMNQSFELGNQTCLAKVLGIYQVMVRQTKSGKEMRHDLMVMENLTFGWKICRQYDLKGALHARFNSVASDVLLDQNFVNDMNSSPLYVSNQAKRILERAVWNDTTFLNSINVMDYSLLVGVDAERRVLVCGIIDYLRQYTWDKHLETWVKSSLVPKNVLPTVISPKEYKRRFRKFMSTHFLSVPDQWCTQKSDSDDPCRLCGGREDDLGKGEQTVCTS 1343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8361776 8368048 - Bda005600.1 Bda11g00850 15958

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00850 1343 CDD PIPKc_PIKfyve 1056 1305 IPR044769 GO:0000285
Bda11g00850 1343 Gene3D - 1171 1306 - -
Bda11g00850 1343 MobiDBLite consensus disorder prediction 438 466 - -
Bda11g00850 1343 CDD Fab1_TCP 33 297 - -
Bda11g00850 1343 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 1087 1249 IPR002498 GO:0016307|GO:0046488
Bda11g00850 1343 Gene3D Phosphatidylinositol Phosphate Kinase II Beta 1025 1168 IPR027484 -
Bda11g00850 1343 SMART PIPK_2 1022 1306 IPR002498 GO:0016307|GO:0046488
Bda11g00850 1343 ProSiteProfiles Phosphatidylinositol phosphate kinase (PIPK) domain profile. 987 1305 IPR002498 GO:0016307|GO:0046488
Bda11g00850 1343 Gene3D GroEL 95 264 IPR027409 -
Bda11g00850 1343 MobiDBLite consensus disorder prediction 438 452 - -
Bda11g00850 1343 Pfam TCP-1/cpn60 chaperonin family 51 293 IPR002423 GO:0005524
Bda11g00850 1343 SUPERFAMILY GroEL apical domain-like 96 264 IPR027409 -
Bda11g00850 1343 PANTHER 1-PHOSPHATIDYLINOSITOL-3-PHOSPHATE 5-KINASE FAB1D-RELATED 3 1327 - -
Bda11g00850 1343 PANTHER 1-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE-RELATED 3 1327 - -
Bda11g00850 1343 SUPERFAMILY SAICAR synthase-like 1048 1305 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00850 K00921 PIKFYVE, FAB1; 1-phosphatidylinositol-3-phosphate 5-kinase [EC:2.7.1.150] - cit:102608890 1506.12
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g00414 Bda11g00850 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00850 Bda-Chr11:8361776 Bda03g01707 Bda-Chr3:56528437 6.92E-14 dispersed
Bda10g01191 Bda-Chr10:45893811 Bda11g00850 Bda-Chr11:8361776 1.28E-97 transposed
Bda11g00850 Bda-Chr11:8361776 Bda03g00414 Bda-Chr3:3605484 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1304 Blo01g01752 . . Bda03g00414 Bpe02g00190 Bpe04g00380 Bma04g00391 Bma01g02535 . . . Cma09g01172 . . . Cpe06g00918 . . . . . . . . . . . . . . . . . . Cone20ag0680 . . . . . . Bda11g00850 . . . . . . . Cmo09g01170 . . . Car09g01046 . . Bhi09g01620 . . . . . . Cla09g00997 Cam09g1055 Cec09g1057 Cco09g1071 . . Cre09g1019 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004019 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 0 0 7 3 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00850 Bda_Chr11 FPKM 43.146389 48.456394 40.935143 41.817253 52.81361 51.210423 54.121769 28.343357 27.732311