Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00852 ATGGCGATGCTCGATTCCCTCTTCAGCAAGGGCTTTAAAGCTTCCAAATGTAAAACGATGTTGAAATTGACAATTCCTCGCATTAAGCTGCTCAGAAACCGAAGAGAAATTCAGATAAAGCAGATGCGCCGGGACATTGCCAAGCTTCTTGAGAATGGTCAAGAAGCTACTGCCCGCATTCGGGTAGAACATATCATTAGAGAAGAGAATATGATGGCTGCTCAGGAGATTCTTGAGCTGTTTTGTGAGCTCATTGCTGTCCGCCTTCCTATTATTGAAATACAAAGAGAATGTCCCCTGGACCTGAAAGAAGCTATATCAAGTGTGTGTTTTGCGGCACCAAGATGTGCCGATCTACCAGAGTTGCTGCAGGTTCAATTGCTTTTTACATCAAAATATGGGAAAGAATTTGTTGCTGCCGCAACGGAGCTGATGCCAGATTGTGGTGTTAATCGCCAGTTGATTGAACTGCTATCTATTCGAGCTCCTTCACCTGAAAAAAAATTGACTCTTTTGAAAGAAATTGCTGAAGAGCATAAAGTAGACTGGGATCCAGCTGTCTCAGAAACAGAACTTTTCAAATCTCATGAAGATTTACTAGTTGTCAGTGGATCAAAATTGCCCCTTCCAAAAGAAAAACACGATGAAACGTTGGACACTTGCCCTGATGAAGCTCTTCTGGAAAAGTCTGAGTCTGATATGGATATGGACATACTAGACCTGCCTAAAGTGCCAATGGAATCAGTATTTGGAGCTTGTGCACCAGATATTGCCACCGCGCCAATTGTGCCACCAATACCTGCAACTACAGAGCTCGAAAAGAAGGTAGACACTCCAGAAAATGTATCACAAGAATCAAACTTCAAAGTTGAAGAGACAAGCCTGGAAATATTTGACTCAAAATATGAGGAGCTTAAAAATATTTCAGCTGGTACCATGGAAGATAAACAATTTCTGCCATTTATTGCACCTCCTTCACCAATATTACCTTCCTCGTTGTATGCAAAATCAATTGAACCGCCAAGTGAACCACCAAGTGAACCACCAAGATCTATTTTAAGGGCTACCAGCGAGGTCAATGTGGATTTACAGGATGTGTTGGCTGCCGCGCAGAATGCTGCTGAGTCAGCTGAACGAGCAGCAGCTGCAGCTCGTGCAGCCGCCAGTCTTGCACAGATCAGAATTAGTGAGATCACGAAGAAAAAAAATGAGCAAGTTCCGGATAGCGGCTCGGGGAACCCATTTCACAAAGATATGCCTAACCAGGGGGATTCTAAAGAATTTTCAGATATAGGTGAGCACAGTTCGCTTGGTAATGTCGCAGTAGAATCTCCTCGAGATGAAAAAATTACTCTGGAATCAGAGGGTTTAAATGTCAGTTCATCTGAATCAATTGAAGTCAATGTCGGACGTGATTCAGTTTATCACACACCTCAAAGATTGCCTTCAATGGAAGATGACACATATTTCGCATATCCAAACTTGTTTACGCTGCAAAATTCAAATGAGGAATCTGGTTCTCATACTCTCGCCGGAAATTCCACTTAA 1548 42.64 MAMLDSLFSKGFKASKCKTMLKLTIPRIKLLRNRREIQIKQMRRDIAKLLENGQEATARIRVEHIIREENMMAAQEILELFCELIAVRLPIIEIQRECPLDLKEAISSVCFAAPRCADLPELLQVQLLFTSKYGKEFVAAATELMPDCGVNRQLIELLSIRAPSPEKKLTLLKEIAEEHKVDWDPAVSETELFKSHEDLLVVSGSKLPLPKEKHDETLDTCPDEALLEKSESDMDMDILDLPKVPMESVFGACAPDIATAPIVPPIPATTELEKKVDTPENVSQESNFKVEETSLEIFDSKYEELKNISAGTMEDKQFLPFIAPPSPILPSSLYAKSIEPPSEPPSEPPRSILRATSEVNVDLQDVLAAAQNAAESAERAAAAARAAASLAQIRISEITKKKNEQVPDSGSGNPFHKDMPNQGDSKEFSDIGEHSSLGNVAVESPRDEKITLESEGLNVSSSESIEVNVGRDSVYHTPQRLPSMEDDTYFAYPNLFTLQNSNEESGSHTLAGNST 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8390767 8393743 + Bda005603.1 Bda11g00852 15960

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00852 515 Coils Coil 360 387 - -
Bda11g00852 515 Pfam Regulator of Vps4 activity in the MVB pathway 18 182 IPR005061 GO:0015031
Bda11g00852 515 Gene3D - 5 191 IPR042277 -
Bda11g00852 515 PANTHER REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN 1 507 - -
Bda11g00852 515 PANTHER IST1 FAMILY MEMBER 1 507 IPR005061 GO:0015031
Bda11g00852 515 Coils Coil 32 59 - -
Bda11g00852 515 MobiDBLite consensus disorder prediction 399 483 - -
Bda11g00852 515 MobiDBLite consensus disorder prediction 454 468 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00852 - - - pper:18767375 529.635
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g00412 Bda11g00852 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02072 Bda-Chr1:56926574 Bda11g00852 Bda-Chr11:8390767 1.49E-52 dispersed
Bda04g00176 Bda-Chr4:5175950 Bda11g00852 Bda-Chr11:8390767 4.85E-69 transposed
Bda09g01157 Bda-Chr9:42348392 Bda11g00852 Bda-Chr11:8390767 2.29E-29 transposed
Bda10g01138 Bda-Chr10:45446280 Bda11g00852 Bda-Chr11:8390767 8.13E-41 transposed
Bda12g00635 Bda-Chr12:29693637 Bda11g00852 Bda-Chr11:8390767 1.57E-06 transposed
Bda11g00852 Bda-Chr11:8390767 Bda03g00412 Bda-Chr3:3559843 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1309 Blo01g01750 Blo12g00768 . Bda03g00412 Bpe02g00192 Bpe04g00378 Bma04g00389 Bma01g02532 . . . . Car01g00848 . . Cpe06g00956 . . . . . . . . Cla08g00312 Cam08g0750 Cec08g0303 . Clacu08g0461 . . . . . Cone20ag0683 . . . . . . Bda11g00852 . . . . . . . Cmo09g01216 . . . Car09g01087 . . . . . . . . . . . . . . . . Lsi08g00258 . Chy03g00282 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006306 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 0 3 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00852 Bda_Chr11 FPKM 113.257637 140.68367 47.34153 51.620979 181.783936 159.552933 179.176437 108.427849 102.348511