Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00854 ATGGGTGTTCATTTATGTCTGTGTTTATGGTTTCAGCTGGAAGAGAAGAACTTCACAAGACTCTGCTCGACGAAGAGCATGTTGGTCGTAAATGGCATGTTTCCTGGTCCGACGATCCATGTTCGTAAAGGCGACAGGGCTTTCGTGAATGCCATCAACAAAGGATCTTATGGCGTCACACTTCACTGGCATGGAGTGAAGCAGCCGAGGAATCCATGGTCGGATGGGCCAGAAAACATAACGCAGTGTCCGATAAAACCAGGCCATAATTTCACGTACGAGGTTATATTCTCTACTGAAGAAGGGACCCTTTGGTGGCACGCTCACAGTGACTGGACTCGAGCCACCGTGCATGGCGCGATTGTCATTTCACCGCCCATCGGAGAGTCTTTCCCTTTCCCCAAACCTTACGCAGAAGAAGTCATTGTGTTAGGTGAATGGTACAAAGGAAGTGTCATGGAAATAATAACCACTGCCTTAGCAACAGGTGGTGACCCAAATATATCTAATGCCTTTACCATCAATGGTTTCGTGGGATCGTTATCCAACTGTTCTTCAGATCTGACGTACAACTTGACAGTAACTCCAGGAAAGACCTATCTTCTGAAAGTAATCAATGCAGCGATGAATGAAGCCCTCTTCTTTGGAATAGCCAATCATACCGTGGCTGTCGTAGCTCAAGATGGTGCCTATATAAAACCCTTCGTTTCATCTTATATAATGATAACTCCAGGCCAGACCATGGATCTTTTGCTCACAGCAAATCAATCTCCAAGCTACTACTACATGGCCGCTTATCCATTCTTTGATAGTGAAGCTCTCTATGACAATTTCACAGTCACAGCAGTGGTGAAATATGAAGGAAACTACACTCCTCCATCGTCTCCTGCGTTTCCAGATCTGCCTGAAACTTCGAATGAAACTGCTGCTTTTGAGTATGGGAAGAAAATCAAGGCCTTGGCTACTGAGAAATATCCTATTAATTTTCCCAGGGGTTCGGTTGATGAGAAGATGTTAATTACTGTCTCCATTGCTGAGATTTTGTGCCCAAATTCTTCTTGTAGTGGGCCAGACGGTAATAGAATTTCTTCTAGCTTAAACAACATAAGCTTTTACACCCCCAATATTGATGTTTTGCAAGCATACGTGAGGAATATCTCCGGAGTCTATGACCCGACTTTCCCAGACTACCCACCGTACTTTTATAACTTCACAGGAGATGTTGGAAATAACACTCGACATCCAACAGTTGCTACGAGAGCCAAGATGTTGGACTATAACGCATCAGTTGAAGTTGTTTTCCAAGGCACCAACGTTATTGCTGCTGAGAGCCATCCCATTCATCTCCATGGATTCAGCTTCTTCTTGGTCGGGAGTGATTTCGGTAACTTTAATGATTCTAGCAACCAAACCTACAACTTGGTTGATCCTCCGGAAATTAACACTTTTTCTCTTCCGAGAAACGGTTGGTCGGCCATTCGTTTCTATGCCGACAATCCCGGTGTGTGGTTTCTACACTGTCATTTTGAGAGACATGCAAGCTGGGGTATGGAGACGGTGTTCATAGTGAGAAATGGGACAACCCCAGAGACCAGTTTGAGGCCCCCTCCATCTGGTCTTCCTACGCATGGAGTGAAGCAGCCGAGGAATCCATGGTCTGATGGGCCAGAAAACATAACGCAGTGTCCGATAAAACCAGGCCATAATTTCACATACGAGGTTATATTCTCTGGTGAAGAAGGGACCCTTTGGTGGCACGCTCACAGCGACTGGACTCGAGCCACCGTGCATGGCGCGATTGTCATTTCACCGCCCGTCGGAGAGTCTTTCCCTTTCCCCAATCCTTACGCAGAACAAGTCATTGTGTTAGCTGAATGGTACAAAGGAGATGTCATGGAAATAATAACCACTGCCTTAGCATCAGGTAGTGACCCAAATACATCTAATGCCTACACCATCAATGGTTTCGTGGGATCATTATCCAACTGTTCTTTAGATCTGACGTACAACTTGACAGTAACTCGAGGAAAAACCTATCTTCTGAAAGTAATCAATGCAGCGATGAATGAAGCCCAATTCTTTGGAATAGCCAATCATACAATGACTGTCGTAGCTCAAGATGGTGCTTATATAAAACCCTTCGTTTCATCTTATATAATGATATCTCCAGGCCAGACAATGGATCTTTTACTAACAGCAAATCAATCTCCAAGCTACTACTACATGGCCTCTTATCCATTCCTTGATAGTCAAGCTCCTTATGACAGTTTCACAGTCACAGCAGTGGTGAAATATGAAGGAAACTACACTCCTCCATCGTCTCCTGCGTTTCCAGATCTGCCTGAAACTTCGAATGAAACTGCTGCTTTTGAGTATGGGAAGAAAATCAAGGCCTTGGCTACTGAGAAATATCCTATTAATTTTCCCAGGGGTTCGGTTGATGAGAAGATGTTAATTACTGTCTCTATTGCTGAGATTTTGTGCCCAAATTCTTCCTGTAGTGGGCCAGACGGTAATAGAATGTCTTCTAGCTTAAACAACATAAGCTTTTACACCCCCAAGATTGATGTTTTGCAAGCATACGTGAGGAATATCTCGGGAGTCTATGATCCGACTTTTCCAGACTATCCACCGTACTTTTATAACTTCACAGGAGATGTTGGAAATAACACTCTATATCCAACAGTTGCGACGAGAGCCAAGGTGTTTGACTATAACGCATCAGTAGAAGTTGTTTTCCAAGGCACCAACATTGCTGCTGAGAGCCATCCCATTCATCTCCATGGATTGAATTTCTTCTTGGTCGGGAGTGATTTCGGTAACTTTAATGATTCTAGCAACCAAACCTACAACTTGGTTGATCCTCCGGAAATTAACACTTTTTCTCTTCCGAGAAACGGTTGGTCGGCCATTCGATTCTATGCAGACAATCCCGGTGTGTGGTTTCTACACTGTCATTTGGAGAGACATACAAGCTGGGGAATGGAGACGGTGTTCATAGTGAAAAATGGGACAACCCCAGAGACCAGTTTGAGGCCCCCTCCATCTGGTCTTCCTACGTGTTCCTAG 3069 44.48 MGVHLCLCLWFQLEEKNFTRLCSTKSMLVVNGMFPGPTIHVRKGDRAFVNAINKGSYGVTLHWHGVKQPRNPWSDGPENITQCPIKPGHNFTYEVIFSTEEGTLWWHAHSDWTRATVHGAIVISPPIGESFPFPKPYAEEVIVLGEWYKGSVMEIITTALATGGDPNISNAFTINGFVGSLSNCSSDLTYNLTVTPGKTYLLKVINAAMNEALFFGIANHTVAVVAQDGAYIKPFVSSYIMITPGQTMDLLLTANQSPSYYYMAAYPFFDSEALYDNFTVTAVVKYEGNYTPPSSPAFPDLPETSNETAAFEYGKKIKALATEKYPINFPRGSVDEKMLITVSIAEILCPNSSCSGPDGNRISSSLNNISFYTPNIDVLQAYVRNISGVYDPTFPDYPPYFYNFTGDVGNNTRHPTVATRAKMLDYNASVEVVFQGTNVIAAESHPIHLHGFSFFLVGSDFGNFNDSSNQTYNLVDPPEINTFSLPRNGWSAIRFYADNPGVWFLHCHFERHASWGMETVFIVRNGTTPETSLRPPPSGLPTHGVKQPRNPWSDGPENITQCPIKPGHNFTYEVIFSGEEGTLWWHAHSDWTRATVHGAIVISPPVGESFPFPNPYAEQVIVLAEWYKGDVMEIITTALASGSDPNTSNAYTINGFVGSLSNCSLDLTYNLTVTRGKTYLLKVINAAMNEAQFFGIANHTMTVVAQDGAYIKPFVSSYIMISPGQTMDLLLTANQSPSYYYMASYPFLDSQAPYDSFTVTAVVKYEGNYTPPSSPAFPDLPETSNETAAFEYGKKIKALATEKYPINFPRGSVDEKMLITVSIAEILCPNSSCSGPDGNRMSSSLNNISFYTPKIDVLQAYVRNISGVYDPTFPDYPPYFYNFTGDVGNNTLYPTVATRAKVFDYNASVEVVFQGTNIAAESHPIHLHGLNFFLVGSDFGNFNDSSNQTYNLVDPPEINTFSLPRNGWSAIRFYADNPGVWFLHCHLERHTSWGMETVFIVKNGTTPETSLRPPPSGLPTCS 1022
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8426203 8441494 + Bda005606.1 Bda11g00854 15962

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00854 1022 CDD CuRO_3_LCC_plant 868 1004 IPR034289 GO:0005507
Bda11g00854 1022 ProSitePatterns Multicopper oxidases signature 2. 984 995 IPR002355 GO:0005507
Bda11g00854 1022 Gene3D - 138 322 IPR008972 -
Bda11g00854 1022 Gene3D - 617 801 IPR008972 -
Bda11g00854 1022 SUPERFAMILY Cupredoxins 133 308 IPR008972 -
Bda11g00854 1022 ProSitePatterns Multicopper oxidases signature 2. 506 517 IPR002355 GO:0005507
Bda11g00854 1022 SUPERFAMILY Cupredoxins 836 1021 IPR008972 -
Bda11g00854 1022 CDD CuRO_1_LCC_plant 11 125 IPR034288 GO:0005507
Bda11g00854 1022 Gene3D - 8 126 IPR008972 -
Bda11g00854 1022 SUPERFAMILY Cupredoxins 10 149 IPR008972 -
Bda11g00854 1022 SUPERFAMILY Cupredoxins 612 787 IPR008972 -
Bda11g00854 1022 Pfam Multicopper oxidase 884 1003 IPR011706 GO:0005507|GO:0016491
Bda11g00854 1022 Pfam Multicopper oxidase 410 525 IPR011706 GO:0005507|GO:0016491
Bda11g00854 1022 Gene3D - 830 1022 IPR008972 -
Bda11g00854 1022 MobiDBLite consensus disorder prediction 528 557 - -
Bda11g00854 1022 ProSitePatterns Multicopper oxidases signature 1. 979 999 IPR033138 -
Bda11g00854 1022 Pfam Multicopper oxidase 140 289 IPR001117 -
Bda11g00854 1022 Pfam Multicopper oxidase 619 767 IPR001117 -
Bda11g00854 1022 PANTHER LACCASE 12 541 - -
Bda11g00854 1022 PANTHER LACCASE 542 1021 - -
Bda11g00854 1022 CDD CuRO_2_LCC_plant 140 286 IPR034285 -
Bda11g00854 1022 SUPERFAMILY Cupredoxins 358 537 IPR008972 -
Bda11g00854 1022 PANTHER MULTI-COPPER OXIDASE 542 1021 IPR045087 -
Bda11g00854 1022 SUPERFAMILY Cupredoxins 543 628 IPR008972 -
Bda11g00854 1022 Gene3D - 530 606 IPR008972 -
Bda11g00854 1022 CDD CuRO_3_LCC_plant 389 526 IPR034289 GO:0005507
Bda11g00854 1022 ProSitePatterns Multicopper oxidases signature 1. 501 521 IPR033138 -
Bda11g00854 1022 Gene3D - 353 529 IPR008972 -
Bda11g00854 1022 CDD CuRO_2_LCC_plant 619 765 IPR034285 -
Bda11g00854 1022 TIGRFAM laccase: laccase 11 542 IPR017761 GO:0046274|GO:0048046|GO:0052716
Bda11g00854 1022 TIGRFAM laccase: laccase 543 1021 IPR017761 GO:0046274|GO:0048046|GO:0052716
Bda11g00854 1022 PANTHER MULTI-COPPER OXIDASE 12 541 IPR045087 -
Bda11g00854 1022 Pfam Multicopper oxidase 540 605 IPR011707 GO:0005507
Bda11g00854 1022 Pfam Multicopper oxidase 14 126 IPR011707 GO:0005507
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00854 K05909 E1.10.3.2; laccase [EC:1.10.3.2] - jre:109008603 758.444
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00854 Bda-Chr11:8426203 Bda11g00856 Bda-Chr11:8457551 1.08E-161 dispersed
Bda11g00854 Bda-Chr11:8426203 Bda11g00855 Bda-Chr11:8451393 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1313 . . . . Bpe02g00194 . . Bma01g02529 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00854 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000013 13 15 12 14 11 15 17 15 13 14 14 15 22 14 16 19 15 33 6 15 14 14 15 20 18 14 13 15 19 34 484
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00854 Bda_Chr11 FPKM 11.462932 9.928432 0.0 0.0 1.47727 1.097307 1.026685 0.0 0.0