Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00855 ATGAAGATGGGTCTGATTCTTGGATTTTTAGGGTTTTTGTTATTCGATGGCTTTCTTCTAGCCATGGCTTATAATGTTCAACACTACACCTTCATTCTGGAAGAGAAGAACTTCACAAGACTCTGCTCGACGAAGAGCATGTTGGTCGTAAATGGCATGTTTCCTGGTCCGACGATCCATGTTCGTAAAGGCGACACGGCTTTCGTGAATGTTATCAACAAAGGATCTTATGGCGTCACACTTCACTGGCATGGAGTGAAGCAGCCGAGGAATCCATGGTCGGATGGGCCAGAAAACATAACGCAGTGTCCGATAAAACCAGGCCATAATTTCACGTACGAGGTTATCTTCTCTAGTGAAGAAGGGACCCTTTGGTGGCACGCTCACAGTGACTGGACTCGAGCCACCGTGCATGGCGCGATTGTCATTTCACCGCCCCTCGGAGAGTCTTTCCCTTTCCCCAAACCTTACGCAGAAGAAGTCATTGTGTTAGCTGAATGGTACAAAGGAGATGTCATGGAAATAATAACCACTGCCTTAGCATCAGGTGGTGACCCAAATATATCTAGTGCCTTTACCATCAATGGTTTCGTGGGATCGTTATCCAACTGTTCTTCAGATCTGACGTACAACTTGACAGTAACTCGAGGAAAGACCTATCTTCTGAAAGTAATCAATGCAGCGATGAATGAAGCCCTCTTCTTTGGAATAGCCAATCATATAGTGACTGTCGTAGCTCAAGATGGTGCCTATATAAAACCTTTCGTTTCATCTTATATAATGATATCTCCAGGCCAGACCATGGATCTTTTACTCACAGCAAATCAATCTCCAAGCTACTACTACATGGCCGCTTATCCATTCTTTGATAGTCAAGCTCCCTATGACAGTTTCACAGTCACAGCAGTGGTGAAATATGATGGAAACTACACTCCTCCGTCGGCTCCTGCGTTTCCAGATCTGCCTGAAACTACGAACGAAACTGCTGCTTTTGAGTATGGGAAGAAAATCAAGGCCTTGGCTACTGAGAAATATCCTATTTATTTTCCCAGGGGTTCGGTTGATGAGAAGATGTTAATTACTGTTTCTATTGCTGTGATTTGCCCAAATTCTTCCTGCGCTCAGCCAGTCGGTAGTAGAATTTCTTCTAGCTTAAACAACATAAGCTTTTACACCCCCAAGATTGATGTTTTGCAAGCATACGTGAGGAATATCTCGGGAGTCTATGACCCGACTTTCCCAGACTATCCACCATACTTTTATAACTTCACAGGAGATGTTGGAAATAACACTCTACAACCAACAGTTGCGACAAGAGCCAAGGTGTTTGACTTTAACGCATCAGTTGAAGTTGTTTTCCAAGGCACCAACGTTATTGCTGCTGAGAGCCATCCCATTCATCTCCATGGATTGAGCTTCTTCTTGGTCGGGAGTGATTTCGGTAACTTTAATGATTCTAGCAACCAAACCTACAACTTGGTTGATCCTCCGGAAGTTAACACTTTTTCTCTTCCGAGAAACGGTTGGTCGGCCATTCGATTCTATGCAGACAATCCCGGTGTGTGGTTTCTACACTGTCATTTGGAGAGACATACAAGCTGGGGAATGGAGACGGTGTTCATAGTGAAAAATGGGACAACCCCAGAGACCAGTTTGAGGCCCCCTCCATCTGGTCTTCCTACGTGTTCCTAG 1692 44.68 MKMGLILGFLGFLLFDGFLLAMAYNVQHYTFILEEKNFTRLCSTKSMLVVNGMFPGPTIHVRKGDTAFVNVINKGSYGVTLHWHGVKQPRNPWSDGPENITQCPIKPGHNFTYEVIFSSEEGTLWWHAHSDWTRATVHGAIVISPPLGESFPFPKPYAEEVIVLAEWYKGDVMEIITTALASGGDPNISSAFTINGFVGSLSNCSSDLTYNLTVTRGKTYLLKVINAAMNEALFFGIANHIVTVVAQDGAYIKPFVSSYIMISPGQTMDLLLTANQSPSYYYMAAYPFFDSQAPYDSFTVTAVVKYDGNYTPPSAPAFPDLPETTNETAAFEYGKKIKALATEKYPIYFPRGSVDEKMLITVSIAVICPNSSCAQPVGSRISSSLNNISFYTPKIDVLQAYVRNISGVYDPTFPDYPPYFYNFTGDVGNNTLQPTVATRAKVFDFNASVEVVFQGTNVIAAESHPIHLHGLSFFLVGSDFGNFNDSSNQTYNLVDPPEVNTFSLPRNGWSAIRFYADNPGVWFLHCHLERHTSWGMETVFIVKNGTTPETSLRPPPSGLPTCS 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8451393 8454990 + Bda005607.1 Bda11g00855 15963

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00855 563 PANTHER LACCASE 28 562 - -
Bda11g00855 563 Pfam Multicopper oxidase 160 309 IPR001117 -
Bda11g00855 563 Gene3D - 20 146 IPR008972 -
Bda11g00855 563 CDD CuRO_2_LCC_plant 160 306 IPR034285 -
Bda11g00855 563 Pfam Multicopper oxidase 429 544 IPR011706 GO:0005507|GO:0016491
Bda11g00855 563 SUPERFAMILY Cupredoxins 377 562 IPR008972 -
Bda11g00855 563 Gene3D - 366 563 IPR008972 -
Bda11g00855 563 Pfam Multicopper oxidase 34 146 IPR011707 GO:0005507
Bda11g00855 563 SUPERFAMILY Cupredoxins 153 328 IPR008972 -
Bda11g00855 563 ProSitePatterns Multicopper oxidases signature 2. 525 536 IPR002355 GO:0005507
Bda11g00855 563 TIGRFAM laccase: laccase 25 562 IPR017761 GO:0046274|GO:0048046|GO:0052716
Bda11g00855 563 CDD CuRO_1_LCC_plant 29 145 IPR034288 GO:0005507
Bda11g00855 563 SUPERFAMILY Cupredoxins 26 169 IPR008972 -
Bda11g00855 563 PANTHER MULTI-COPPER OXIDASE 28 562 IPR045087 -
Bda11g00855 563 ProSitePatterns Multicopper oxidases signature 1. 520 540 IPR033138 -
Bda11g00855 563 CDD CuRO_3_LCC_plant 408 545 IPR034289 GO:0005507
Bda11g00855 563 Gene3D - 158 342 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00855 K05909 E1.10.3.2; laccase [EC:1.10.3.2] - jre:109008603 771.926
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00855 Bda-Chr11:8451393 Bda14g01005 Bda-Chr14:8456809 0 dispersed
Bda11g00854 Bda-Chr11:8426203 Bda11g00855 Bda-Chr11:8451393 0 tandem
Bda11g00855 Bda-Chr11:8451393 Bda11g00856 Bda-Chr11:8457551 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1314 . . . . . . . Bma01g02527 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme03g00284 . . Bda11g00855 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000013 13 15 12 14 11 15 17 15 13 14 14 15 22 14 16 19 15 33 6 15 14 14 15 20 18 14 13 15 19 34 484
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00855 Bda_Chr11 FPKM 28.793186 30.41054 79.336884 83.297012 11.489734 11.801616 13.843993 144.33223 141.233582