Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00856 AGGCTGTGTCACAAAAAGAACATTTTGACAGTAAATGGACAATATCCAGGACCAACCATATATGCAAGGAAAGGAGAAACAATCTATGTCACTGTTTATAACAAGGGCACGGACAACATCACTCTTCACTGGCACGGAGTAAAATTACCGAGATATCCTTGGTCGGACGGTCCGGAGTACATTACTCAATGTCCGATCAAACCCGGAGGAGTGTTCCGGCAGAAGGTTATATTCTCGACGGAGGAAGGGACTCTATGGTGGCATGCTCATAGTGCTTGGTACAGAGCCACAGTTCATGGGGCTATAATTATTTATCCAGAGGAGGGAAAAAGCTACCCTTTTCCTCAGCCTTATGAAGAGGTTCCCATCATATTAGGAGAATGGTGGAAGAAGGACATAAAGCAGGTTTATGATCTCTTCGTGAGAACCGGAGGAGACCCCAACGTCTCTAATGCTCTGACAATCAATGGTCAACCCGGCGACCTCTATCACTGTTCAAGATCAAAAACATTCAAGCTAGCTGTGGATGAAGGAAAGTCTTATCTTCTCCGGTTCGTCAACGCCGCCATGAACATCATCTTCTACTTCTCCATCTCAAATCACAACCTCACAGTAGTCGGAATAGACGGAAGCTACACAAAGCCGTTATCTAGAGATTTAATCGTCATCTCTCCCGGCCAAACCCTAGACGCTTTGCTTTACACAGACCAAAACCCTAATCATCGTTATTACATGGCAGGTAGGGCTTACGCAGGTAACCTGAATATCCCATTTGATAACACCACTACTACAGCTATTCTGGAATATAAAAAGAGAAGTTCCTCTAACAGAAGTTCATCTCCTTTGTTCCCTTATCTTCCTTATTACAACGACACAAACGCCAGTTTCAGCTTTTTTGGAGCCCTTAGAAGCTTAGTTGACGAAGAACATCCCATTTATCTTCCTCTAAATACAACAACCAATCTGGTTTCCACTGTTTCTATCAATACGTTTCCTTGTGAACGTAATAATTCTTGTGAAGGTCCCAATGGCACTCGCCTAGCAGCTAGCATGAACAACATAAGCTTTGTACTTCCATCGGTCGACATCTTAGAAGCTTATTACTATCACATTCATCGGGTTTTCAGCGAGAACTTTCCGAGTTTTCCGCCGTACGTCTTTAATTACACGGGCGATTATCTACCGTTGATCTTGCAGACACCGAAAAGGGGGACGAGGGTGAAAGTTCTCCATTACAATTCGACCGTCGAAGTCGTTTTGCAAGGAACAAACGTTGTTGCTGCGATTGACCATCCTATGCATCTTCATGGACATAGCTTCTACGTTGTTGGATTTGGATTTGGGAACTTTAATGAATCTACAGATCCTATGAATTATAATCTTGTTGACCCTCCTCGTAGAAATACAGCTACTGTTCCAAAAAATGGATGGCTTGCCATCAGATTCATCGCCAACAATCCAGGAGTTTGGTTCCTGCATTGCCATTTTGAGAGGCACTTAACATGGGGAATGGAGACAGCGTTCATAGTAAGGAATGGCAAAGAGAGAGAAGAAAAGATATTACCTCCACCCCCAGACATGCCTCCCTGCTGA 1593 43.75 RLCHKKNILTVNGQYPGPTIYARKGETIYVTVYNKGTDNITLHWHGVKLPRYPWSDGPEYITQCPIKPGGVFRQKVIFSTEEGTLWWHAHSAWYRATVHGAIIIYPEEGKSYPFPQPYEEVPIILGEWWKKDIKQVYDLFVRTGGDPNVSNALTINGQPGDLYHCSRSKTFKLAVDEGKSYLLRFVNAAMNIIFYFSISNHNLTVVGIDGSYTKPLSRDLIVISPGQTLDALLYTDQNPNHRYYMAGRAYAGNLNIPFDNTTTTAILEYKKRSSSNRSSSPLFPYLPYYNDTNASFSFFGALRSLVDEEHPIYLPLNTTTNLVSTVSINTFPCERNNSCEGPNGTRLAASMNNISFVLPSVDILEAYYYHIHRVFSENFPSFPPYVFNYTGDYLPLILQTPKRGTRVKVLHYNSTVEVVLQGTNVVAAIDHPMHLHGHSFYVVGFGFGNFNESTDPMNYNLVDPPRRNTATVPKNGWLAIRFIANNPGVWFLHCHFERHLTWGMETAFIVRNGKEREEKILPPPPDMPPC 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8457551 8459684 + Bda005608.1 Bda11g00856 15964

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00856 530 ProSitePatterns Multicopper oxidases signature 1. 488 508 IPR033138 -
Bda11g00856 530 CDD CuRO_3_LCC_plant 374 513 IPR034289 GO:0005507
Bda11g00856 530 Gene3D - 2 115 IPR008972 -
Bda11g00856 530 Gene3D - 118 307 IPR008972 -
Bda11g00856 530 Gene3D - 335 530 IPR008972 -
Bda11g00856 530 PANTHER LACCASE 1 530 - -
Bda11g00856 530 CDD CuRO_1_LCC_plant 1 106 IPR034288 GO:0005507
Bda11g00856 530 Pfam Multicopper oxidase 119 271 IPR001117 -
Bda11g00856 530 ProSitePatterns Multicopper oxidases signature 2. 493 504 IPR002355 GO:0005507
Bda11g00856 530 Pfam Multicopper oxidase 3 108 IPR011707 GO:0005507
Bda11g00856 530 SUPERFAMILY Cupredoxins 3 131 IPR008972 -
Bda11g00856 530 SUPERFAMILY Cupredoxins 114 307 IPR008972 -
Bda11g00856 530 TIGRFAM laccase: laccase 1 530 IPR017761 GO:0046274|GO:0048046|GO:0052716
Bda11g00856 530 Pfam Multicopper oxidase 400 513 IPR011706 GO:0005507|GO:0016491
Bda11g00856 530 SUPERFAMILY Cupredoxins 341 530 IPR008972 -
Bda11g00856 530 CDD CuRO_2_LCC_plant 121 269 IPR034285 -
Bda11g00856 530 PANTHER MULTI-COPPER OXIDASE 1 530 IPR045087 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00856 K05909 E1.10.3.2; laccase [EC:1.10.3.2] K19791 twl:119993258 783.482
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00854 Bda-Chr11:8426203 Bda11g00856 Bda-Chr11:8457551 1.08E-161 dispersed
Bda11g00856 Bda-Chr11:8457551 Bda14g00225 Bda-Chr14:1526627 0 dispersed
Bda11g00855 Bda-Chr11:8451393 Bda11g00856 Bda-Chr11:8457551 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1316 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme03g00284 . . Bda11g00856 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy03g00200 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000013 13 15 12 14 11 15 17 15 13 14 14 15 22 14 16 19 15 33 6 15 14 14 15 20 18 14 13 15 19 34 484
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00856 Bda_Chr11 FPKM 0.0 0.0 0.0 5.040098 0.0 0.0 0.0 8.404857 9.858854