Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00858 ATGGCGGCGGCGACTCCAGCTCCGGTTATTCAGGCTCAGGCAGCAGCCGCTCATCCAGTGGGAGGATTCGCTAACGCTTCGTTGTATGTCGGGGATCTTGACCCTAATGTGAATGAGGGGCAGTTGTTAGATCTGTTTAGCCAAATTGCTCAAGTTGTTAGTGTTAGGGTTTGTAGGGATCAGACTCGAAGGCAATCCCTTGGCTATGCCTATGTCAATTTCACTAATCCTCAGGATGCCATCAATGCTATGGAGGCTTTGAATTTTACTCCACTTAATGGGAAGCCCATAAGGATTATGTATTCTCATCGTGATCCTAGTATTCGGAAAAGTGGATTTGCAAATGTTTTTATCAAGAATCTAGATACCTCAATAGATAACAAGGCATTGCACGATACTTTTGCTCAATTTGGATCCGTTCTCTCTTGCAAGGTTGCTGTTGATGGCAATGGTCAATCAAGAGGTCATGGATTCGTTCAGTTTGAGAGTGAAGAATCTGCACAAAATGCTATTAGAAAATTGAATGGCATGCTGATTAATGATAAACAAGTTTATGTTGGGATTTTTATTCGGCGCCTCGAAAGGAATCAAGTTAAGGGATCTCCAAAGTTTACTAATCTTTATGTCAAGAATTTACCTGAAACAACTACTGACGATGACCTAAAGAAAATTTTTGACTCTTTTGGTACTATCACAAGTGCTGTTGTTATGAAGGACGCAACTGGTAAATCGAGAGGTTTTGGTTTTGTTAACTTTCAGAACTCGGATGCAGCAGCTTATGCAGTTGAGAAGTTGAATGGAACCACTATTGGTGAGGACAGAGTTTTATATGTTGGTAGGGCTCAAAGGAAATCGGAGAGAGAGGCAGAGTTGAAAGCCAAATTTCACCAAGAAAGAATTAGTAAATATGAAAAACTTCAAGGTGCTAATCTATACCTTAAAAATCTTGACGATGGTATCAGCGAAGAGAAACTGAAAGATTTATTCTCTGAGTTTGGAACAATAACATCGTGCAAGGTCATGATTGGTCAGCATGGGTTGAGCAAGGGTTCTGGTTTTGTGGCCTTTTCTTCGCCTGATGAAGCAACAAGAGCTTTGAACGAAATGAATGGAAAGATGATTGGACGGAAGCCTCTATATGTTGCTGTGGCTCAGCGAAAGGAAGAAAGGAAGGCTAGACTTCAGGCACACTTTGCACAAATTCGAGCACCTAGTGCCATTGCCCCTCTTCCTTCAGGAATTCCTGGATTTCATCCTGGTGCTAGACTTGCCCCTCAACCACTGTATTTTGGTCAAGGAACTCCTGGTATGATGCCCCCTCAGCCTGCCGGTTTTGGATTCCAGCAGCAACTCCTACCAGGGATGCGACCTGGTGTCGCCCCAAACTTTATAGTTCCATATCCGCTTCAGAGGCAGAACCAACCTGGACAGCGAATGGGTGTTCGACGAGGGGCAAACCCCCACCCTCAGCAATTGCAGCAGCAACAGTTAATGCAGCGTAACTCTGGTCAAGGCTTTCGATACTTGAGCACTCCACGAAATGGTTTGGACCCATCTATCATGCCTCAAGGTCTCGTCGCCCCGATGATGCCTTTGGCGTTTGATGGTTCGGGAATGCCGTATTCTCCAACTGATATCCAACGCACCAGGCCTCCCATGTCGACTCTTGCTTCTGCTTTAGCTTCTGCAAGCCCAGAGAGTCAGCGTGTGATGCTGGGTGAGCAGTTGTATCCACTTGTAGAGCGGCTCGAGCCAGGAAATGCTGCGAAGGTGACGGGAATGCTGCTAGAGATGGACCAACCGGAGGTACTTCATCTCATCGAGTCTCCTGATGATTTGAAGAGTAAAGTGGCCGAGGCCATGGAAGTCCTTCGCAAAGCTGCAGTGGAGTCTGATGTTTCAGATCAACTTGGTTCGATGACGCTCAATGAATGA 1935 45.53 MAAATPAPVIQAQAAAAHPVGGFANASLYVGDLDPNVNEGQLLDLFSQIAQVVSVRVCRDQTRRQSLGYAYVNFTNPQDAINAMEALNFTPLNGKPIRIMYSHRDPSIRKSGFANVFIKNLDTSIDNKALHDTFAQFGSVLSCKVAVDGNGQSRGHGFVQFESEESAQNAIRKLNGMLINDKQVYVGIFIRRLERNQVKGSPKFTNLYVKNLPETTTDDDLKKIFDSFGTITSAVVMKDATGKSRGFGFVNFQNSDAAAYAVEKLNGTTIGEDRVLYVGRAQRKSEREAELKAKFHQERISKYEKLQGANLYLKNLDDGISEEKLKDLFSEFGTITSCKVMIGQHGLSKGSGFVAFSSPDEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAHFAQIRAPSAIAPLPSGIPGFHPGARLAPQPLYFGQGTPGMMPPQPAGFGFQQQLLPGMRPGVAPNFIVPYPLQRQNQPGQRMGVRRGANPHPQQLQQQQLMQRNSGQGFRYLSTPRNGLDPSIMPQGLVAPMMPLAFDGSGMPYSPTDIQRTRPPMSTLASALASASPESQRVMLGEQLYPLVERLEPGNAAKVTGMLLEMDQPEVLHLIESPDDLKSKVAEAMEVLRKAAVESDVSDQLGSMTLNE 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8470077 8473486 + Bda005610.2 Bda11g00858 15966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00858 644 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 191 IPR000504 GO:0003723
Bda11g00858 644 SMART rrm2_1 310 382 IPR003954 GO:0003676
Bda11g00858 644 SMART rrm2_1 206 278 IPR003954 GO:0003676
Bda11g00858 644 SMART rrm2_1 27 100 IPR003954 GO:0003676
Bda11g00858 644 SMART rrm2_1 115 187 IPR003954 GO:0003676
Bda11g00858 644 Gene3D - 13 114 IPR012677 -
Bda11g00858 644 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 283 IPR000504 GO:0003723
Bda11g00858 644 SMART rrm1_1 115 187 IPR000504 GO:0003723
Bda11g00858 644 SMART rrm1_1 310 382 IPR000504 GO:0003723
Bda11g00858 644 SMART rrm1_1 27 100 IPR000504 GO:0003723
Bda11g00858 644 SMART rrm1_1 206 279 IPR000504 GO:0003723
Bda11g00858 644 Pfam Poly-adenylate binding protein, unique domain 560 624 IPR002004 GO:0003723
Bda11g00858 644 Gene3D - 190 293 IPR012677 -
Bda11g00858 644 Gene3D - 294 398 IPR012677 -
Bda11g00858 644 PANTHER POLYADENYLATE-BINDING PROTEIN 21 632 - -
Bda11g00858 644 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 386 IPR000504 GO:0003723
Bda11g00858 644 PANTHER RNA BINDING PROTEIN 21 632 - -
Bda11g00858 644 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 552 629 IPR002004 GO:0003723
Bda11g00858 644 CDD RRM3_I_PABPs 204 284 - -
Bda11g00858 644 CDD RRM4_I_PABPs 308 386 - -
Bda11g00858 644 SMART poly_2 564 627 IPR002004 GO:0003723
Bda11g00858 644 SUPERFAMILY RNA-binding domain, RBD 204 390 IPR035979 GO:0003676
Bda11g00858 644 CDD RRM1_I_PABPs 27 106 - -
Bda11g00858 644 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 104 IPR000504 GO:0003723
Bda11g00858 644 SUPERFAMILY RNA-binding domain, RBD 26 191 IPR035979 GO:0003676
Bda11g00858 644 Coils Coil 286 306 - -
Bda11g00858 644 Gene3D - 115 188 IPR012677 -
Bda11g00858 644 CDD RRM2_I_PABPs 112 187 IPR045305 -
Bda11g00858 644 Gene3D - 549 629 - -
Bda11g00858 644 SUPERFAMILY PABC (PABP) domain 494 628 IPR036053 GO:0003723
Bda11g00858 644 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 26 625 IPR006515 GO:0003723
Bda11g00858 644 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 207 272 IPR000504 GO:0003723
Bda11g00858 644 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 98 IPR000504 GO:0003723
Bda11g00858 644 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 379 IPR000504 GO:0003723
Bda11g00858 644 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 184 IPR000504 GO:0003723
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01696 Bda-Chr3:56394646 Bda11g00858 Bda-Chr11:8470077 1.10E-150 dispersed
Bda05g01200 Bda-Chr5:59998272 Bda11g00858 Bda-Chr11:8470077 4.74E-147 dispersed
Bda06g01291 Bda-Chr6:43513404 Bda11g00858 Bda-Chr11:8470077 3.31E-06 dispersed
Bda11g00858 Bda-Chr11:8470077 Bda14g00509 Bda-Chr14:3707904 0 dispersed
Bda13g00408 Bda-Chr13:5016288 Bda11g00858 Bda-Chr11:8470077 1.75E-12 dispersed
Bda11g00858 Bda-Chr11:8470077 Bda01g01608 Bda-Chr1:51929890 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00858 K13126 - zju:107421570 939.102