Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda11g00858 | ATGGCGGCGGCGACTCCAGCTCCGGTTATTCAGGCTCAGGCAGCAGCCGCTCATCCAGTGGGAGGATTCGCTAACGCTTCGTTGTATGTCGGGGATCTTGACCCTAATGTGAATGAGGGGCAGTTGTTAGATCTGTTTAGCCAAATTGCTCAAGTTGTTAGTGTTAGGGTTTGTAGGGATCAGACTCGAAGGCAATCCCTTGGCTATGCCTATGTCAATTTCACTAATCCTCAGGATGCCATCAATGCTATGGAGGCTTTGAATTTTACTCCACTTAATGGGAAGCCCATAAGGATTATGTATTCTCATCGTGATCCTAGTATTCGGAAAAGTGGATTTGCAAATGTTTTTATCAAGAATCTAGATACCTCAATAGATAACAAGGCATTGCACGATACTTTTGCTCAATTTGGATCCGTTCTCTCTTGCAAGGTTGCTGTTGATGGCAATGGTCAATCAAGAGGTCATGGATTCGTTCAGTTTGAGAGTGAAGAATCTGCACAAAATGCTATTAGAAAATTGAATGGCATGCTGATTAATGATAAACAAGTTTATGTTGGGATTTTTATTCGGCGCCTCGAAAGGAATCAAGTTAAGGGATCTCCAAAGTTTACTAATCTTTATGTCAAGAATTTACCTGAAACAACTACTGACGATGACCTAAAGAAAATTTTTGACTCTTTTGGTACTATCACAAGTGCTGTTGTTATGAAGGACGCAACTGGTAAATCGAGAGGTTTTGGTTTTGTTAACTTTCAGAACTCGGATGCAGCAGCTTATGCAGTTGAGAAGTTGAATGGAACCACTATTGGTGAGGACAGAGTTTTATATGTTGGTAGGGCTCAAAGGAAATCGGAGAGAGAGGCAGAGTTGAAAGCCAAATTTCACCAAGAAAGAATTAGTAAATATGAAAAACTTCAAGGTGCTAATCTATACCTTAAAAATCTTGACGATGGTATCAGCGAAGAGAAACTGAAAGATTTATTCTCTGAGTTTGGAACAATAACATCGTGCAAGGTCATGATTGGTCAGCATGGGTTGAGCAAGGGTTCTGGTTTTGTGGCCTTTTCTTCGCCTGATGAAGCAACAAGAGCTTTGAACGAAATGAATGGAAAGATGATTGGACGGAAGCCTCTATATGTTGCTGTGGCTCAGCGAAAGGAAGAAAGGAAGGCTAGACTTCAGGCACACTTTGCACAAATTCGAGCACCTAGTGCCATTGCCCCTCTTCCTTCAGGAATTCCTGGATTTCATCCTGGTGCTAGACTTGCCCCTCAACCACTGTATTTTGGTCAAGGAACTCCTGGTATGATGCCCCCTCAGCCTGCCGGTTTTGGATTCCAGCAGCAACTCCTACCAGGGATGCGACCTGGTGTCGCCCCAAACTTTATAGTTCCATATCCGCTTCAGAGGCAGAACCAACCTGGACAGCGAATGGGTGTTCGACGAGGGGCAAACCCCCACCCTCAGCAATTGCAGCAGCAACAGTTAATGCAGCGTAACTCTGGTCAAGGCTTTCGATACTTGAGCACTCCACGAAATGGTTTGGACCCATCTATCATGCCTCAAGGTCTCGTCGCCCCGATGATGCCTTTGGCGTTTGATGGTTCGGGAATGCCGTATTCTCCAACTGATATCCAACGCACCAGGCCTCCCATGTCGACTCTTGCTTCTGCTTTAGCTTCTGCAAGCCCAGAGAGTCAGCGTGTGATGCTGGGTGAGCAGTTGTATCCACTTGTAGAGCGGCTCGAGCCAGGAAATGCTGCGAAGGTGACGGGAATGCTGCTAGAGATGGACCAACCGGAGGTACTTCATCTCATCGAGTCTCCTGATGATTTGAAGAGTAAAGTGGCCGAGGCCATGGAAGTCCTTCGCAAAGCTGCAGTGGAGTCTGATGTTTCAGATCAACTTGGTTCGATGACGCTCAATGAATGA | 1935 | 45.53 | MAAATPAPVIQAQAAAAHPVGGFANASLYVGDLDPNVNEGQLLDLFSQIAQVVSVRVCRDQTRRQSLGYAYVNFTNPQDAINAMEALNFTPLNGKPIRIMYSHRDPSIRKSGFANVFIKNLDTSIDNKALHDTFAQFGSVLSCKVAVDGNGQSRGHGFVQFESEESAQNAIRKLNGMLINDKQVYVGIFIRRLERNQVKGSPKFTNLYVKNLPETTTDDDLKKIFDSFGTITSAVVMKDATGKSRGFGFVNFQNSDAAAYAVEKLNGTTIGEDRVLYVGRAQRKSEREAELKAKFHQERISKYEKLQGANLYLKNLDDGISEEKLKDLFSEFGTITSCKVMIGQHGLSKGSGFVAFSSPDEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAHFAQIRAPSAIAPLPSGIPGFHPGARLAPQPLYFGQGTPGMMPPQPAGFGFQQQLLPGMRPGVAPNFIVPYPLQRQNQPGQRMGVRRGANPHPQQLQQQQLMQRNSGQGFRYLSTPRNGLDPSIMPQGLVAPMMPLAFDGSGMPYSPTDIQRTRPPMSTLASALASASPESQRVMLGEQLYPLVERLEPGNAAKVTGMLLEMDQPEVLHLIESPDDLKSKVAEAMEVLRKAAVESDVSDQLGSMTLNE | 644 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 8470077 | 8473486 | + | Bda005610.2 | Bda11g00858 | 15966 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda11g00858 | 644 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 114 | 191 | IPR000504 | GO:0003723 | |
Bda11g00858 | 644 | SMART | rrm2_1 | 310 | 382 | IPR003954 | GO:0003676 | |
Bda11g00858 | 644 | SMART | rrm2_1 | 206 | 278 | IPR003954 | GO:0003676 | |
Bda11g00858 | 644 | SMART | rrm2_1 | 27 | 100 | IPR003954 | GO:0003676 | |
Bda11g00858 | 644 | SMART | rrm2_1 | 115 | 187 | IPR003954 | GO:0003676 | |
Bda11g00858 | 644 | Gene3D | - | 13 | 114 | IPR012677 | - | |
Bda11g00858 | 644 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 205 | 283 | IPR000504 | GO:0003723 | |
Bda11g00858 | 644 | SMART | rrm1_1 | 115 | 187 | IPR000504 | GO:0003723 | |
Bda11g00858 | 644 | SMART | rrm1_1 | 310 | 382 | IPR000504 | GO:0003723 | |
Bda11g00858 | 644 | SMART | rrm1_1 | 27 | 100 | IPR000504 | GO:0003723 | |
Bda11g00858 | 644 | SMART | rrm1_1 | 206 | 279 | IPR000504 | GO:0003723 | |
Bda11g00858 | 644 | Pfam | Poly-adenylate binding protein, unique domain | 560 | 624 | IPR002004 | GO:0003723 | |
Bda11g00858 | 644 | Gene3D | - | 190 | 293 | IPR012677 | - | |
Bda11g00858 | 644 | Gene3D | - | 294 | 398 | IPR012677 | - | |
Bda11g00858 | 644 | PANTHER | POLYADENYLATE-BINDING PROTEIN | 21 | 632 | - | - | |
Bda11g00858 | 644 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 309 | 386 | IPR000504 | GO:0003723 | |
Bda11g00858 | 644 | PANTHER | RNA BINDING PROTEIN | 21 | 632 | - | - | |
Bda11g00858 | 644 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 552 | 629 | IPR002004 | GO:0003723 | |
Bda11g00858 | 644 | CDD | RRM3_I_PABPs | 204 | 284 | - | - | |
Bda11g00858 | 644 | CDD | RRM4_I_PABPs | 308 | 386 | - | - | |
Bda11g00858 | 644 | SMART | poly_2 | 564 | 627 | IPR002004 | GO:0003723 | |
Bda11g00858 | 644 | SUPERFAMILY | RNA-binding domain, RBD | 204 | 390 | IPR035979 | GO:0003676 | |
Bda11g00858 | 644 | CDD | RRM1_I_PABPs | 27 | 106 | - | - | |
Bda11g00858 | 644 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 26 | 104 | IPR000504 | GO:0003723 | |
Bda11g00858 | 644 | SUPERFAMILY | RNA-binding domain, RBD | 26 | 191 | IPR035979 | GO:0003676 | |
Bda11g00858 | 644 | Coils | Coil | 286 | 306 | - | - | |
Bda11g00858 | 644 | Gene3D | - | 115 | 188 | IPR012677 | - | |
Bda11g00858 | 644 | CDD | RRM2_I_PABPs | 112 | 187 | IPR045305 | - | |
Bda11g00858 | 644 | Gene3D | - | 549 | 629 | - | - | |
Bda11g00858 | 644 | SUPERFAMILY | PABC (PABP) domain | 494 | 628 | IPR036053 | GO:0003723 | |
Bda11g00858 | 644 | TIGRFAM | PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family | 26 | 625 | IPR006515 | GO:0003723 | |
Bda11g00858 | 644 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 207 | 272 | IPR000504 | GO:0003723 | |
Bda11g00858 | 644 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 28 | 98 | IPR000504 | GO:0003723 | |
Bda11g00858 | 644 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 311 | 379 | IPR000504 | GO:0003723 | |
Bda11g00858 | 644 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 116 | 184 | IPR000504 | GO:0003723 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda03g01696 | Bda-Chr3:56394646 | Bda11g00858 | Bda-Chr11:8470077 | 1.10E-150 | dispersed | |
Bda05g01200 | Bda-Chr5:59998272 | Bda11g00858 | Bda-Chr11:8470077 | 4.74E-147 | dispersed | |
Bda06g01291 | Bda-Chr6:43513404 | Bda11g00858 | Bda-Chr11:8470077 | 3.31E-06 | dispersed | |
Bda11g00858 | Bda-Chr11:8470077 | Bda14g00509 | Bda-Chr14:3707904 | 0 | dispersed | |
Bda13g00408 | Bda-Chr13:5016288 | Bda11g00858 | Bda-Chr11:8470077 | 1.75E-12 | dispersed | |
Bda11g00858 | Bda-Chr11:8470077 | Bda01g01608 | Bda-Chr1:51929890 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda11g00858 | K13126 | - | zju:107421570 | 939.102 |