Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00870 ATGGATACCAAAGGTCGACTCATTGCTGGTTCTCACAATAGAAATGAGTTTGTTCTCATCAATGCTGATGAGGTTGCTAGAGTCACTTCTGTCAAGGAGCTAAGCGGGCAAATTTGCCAGATCTGTGGAGATGAGATAGAGTTTACAGTCGATGGTGAGCCGTTTGTTGCCTGCAATGAATGTGCATTTCCAGTCTGTAGACCTTGCTATGAGTATGAAAGAAGAGAGGGAAATCAAGCTTGCCCTCAATGCAAAACTCGATATAAACGAATCAAAGGGTCTCCTCGAGTCGAAGGTGACGAAGAGGAAGAAGATGTGGACGATTTGGAGAACGAGTTTGATATCTCGAGCAAAGATCCTCACTACATTGCAGAGCAAATGCTTTCTTCTCACCTTAATGTGGGCAGAGGCTCTCAAATAAATGGATATCACATGTCTTCGGAATTGGATGCTTCTTCCCCTCCTATGAACATTCCCCTCCTCACCTATGACCAAGAGACAAATTTTAAGGATGCTGGAATTTCTTCCGACAAACATGCTCTTATCATTCCTCCTTTTATTAGCCGGGGAAAAAGGGTTCATCCTATGCCGTATACTGATAATTCTGTGACTGTTCAACCAAGGCCAATGGATCCTAAGAAAGATTTAGCTGTGTATGGATATGGAACTGTTGCATGGAAAGAAAGAATGGAGGAGTGGAAGAGGAAACAGAACGAAAAGCTACAGGTCGTGAAGCATGAAGGAGATGGTGGAAACGAGTTTGACGATCCAGATTTGCCCATGATGGATGAAGGGAGGCAGCCTCTGTCTAGGAAATTGCCAATTTCTTCAAGCAAGATAAACCCGTACCGGTTGATAATATTACTTCGTATCGCTATCCTTGGCTTGTTCTTCCATTATCGAATTCTCCATCCTGTCAATGATGCCTATGGATTGTGGCTAACTTCTGTAATCTGTGAGATCTGGTTTGCTGTGTCATGGATATTGGATCAATTCCCTAAATGGTGCCCCATTGTCCGAGAAACTTACCTCGATCGCCTCTCACTCAGGTACGAAAAAGAAGGAAAGCCATCTGAGTTAGCTTCGGTCGATGTATTTGTGAGTACAGTGGATCCCATGAAAGAACCTCCACTTATCACAGCCAACACAGTCTTGTCCATACTCGCTGTCGATTACCCTGTTGATAAAGTTGCCTGCTATGTTTCTGATGATGGTGCCGCCATGCTAACTTTCGAAGCCCTCTCCGAAACATCAGAATTTGCGAGAAAGTGGGTGCCCTTCTGCAAGAAGTTTAGCATCGAGCCTAGGGCTCCGGAATGGTACTTCGCCCAGAAGGTTGACTATTTGAAAGATAAAGTCGATCCAGCATTTATTCGAGAAAGACGTGCAATTAAGAGAGAATACGAAGAATTCAAAGTTCGAATCAATTCATTAGTTGCAATGGCCCAGAAGGTTCCGGAAGATGGGTGGACAATGCAAGATGGAACTCCATGGCCTGGAAACAATGTTAGGGACCATCCCGGAATGATCCAGGTTTTTCTTGGTCAGAATGGTGTTTGTGACTTGGAAGGAAATGAATTGCCTCGCCTTGTTTATGTATCCCGAGAGAAGAGACCAGGATTTGATCATCATAAAAAGGCTGGTGCCATGAATGCATTGGTCCGAGTCTCTGCAATTATCTCGAATGCTCCATACATGCTGAATGTGGATTGTGATCACTACATAAACAACAGTAAGGCACTTAGAGAAGCAATGTGCTTCATGATGGATCCTATTTGCGGAAAGAAAATATGCTATGTCCAATTCCCTCAAAGATTCGACGGTATTGATCGGCACGATCGATATTCGAATCGCAATGTCGTCTTCTTTGATATCAACATGAAAGGGTTAGATGGGATCCAAGGGCCCATTTATGTTGGAACTGGTTGTGTCTTCCGGAGGCAGGCCCTCTATGGATATGATGCTCCTGCTAAGAAGAAAGCTCCGCAAAGGACTTGTAATTGTTGGCCGAAATGGTGTTGTTTGTGTTGCGGATCGAGAAAAAAGAATAATAAGAAGGGGAAGACTATGGACAAGAAGAAGTCGAAGAACAAGGATGGTTCAAAGCAGATACATGCATTAGAAAATATTGAAGAAGGAATTGAAGGAATTGACAACGAAAAGTCGTCTCTAATGCCTCAAATTAAGTTTGAAAAGAAATTTGGACAGTCAGCCGTATTCATAGCTTCAACGCTTAAGGAAAACGGCGGAGTACCTGAAGGTGTAACTTCTGCTTCGCTCTTGAAGGAAGCAATTCATGTCATTAGCTGTGGATATGAAGACAAAACCGAATGGGGAAAAGAGGTTGGTTGGATATATGGCTCAGTCACGGAGGATATATTAACAGGCTTCAAGATGCACTGTCATGGTTGGCGATCTGTTTATTGCATACCCAAAAGAGCTGCATTTAAAGGGTCAGCTCCGATTAATCTTTCTGACCGGTTGCACCAAGTTCTTCGGTGGGCTCTCGGGTCAGTTGAGATTCTCTTGAGCAGGCATTGTCCGATATGGTATGGATATGGTTGCGGCTTGAAGTGGCTTGAGCGTTTCTCCTACATAAACTCAGTTGTTTATCCCTTGACATCCATTCCCTTGATTGCTTATTGTACTTTGCCTGCTGTCTGTCTTCTCACCGGAAAGTTCATCGTCCCAGAGCTTAGCGACTATGCCAGTATCATTTTCATGGCTCTTTTCATTTCGATAGCAGCTACTGGTATCTTAGAAATGCAGTGGGGTGGAGTTGGAATCCACGATTGGTGGAGAAATGAACAATTCTGGGTGATTGGAGGTGTTTCCGCCCACCTTTTCGCCCTATTCCAAGGTCTTCTCAAGGTTTTGGCTGGAATAAACACAAACTTCACTGTCACATCGAAAGCCGCCGATGACGGAGAGTTCTCGGAGCTCTACCTCTTCAAATGGACGTCCTTATTGATCGCACCCATGTCTCTACTCATTATAAACATCATCGGTGTTATCGTCGGAATTTCAGATGCCATCAATAATGGCTACGATTCATGGGGTCCGCTCATCGGTAAGCTATTTTTTGCCTTCTGGGTCATCGTCCATCTGTACCCCTTCCTGAAAGGTTTGATGGGGAAACAAGATAAGGTTCCTACAATCATCATAGTCTGGTCTATTCTCCTATCTTCCATATTCTCGCTTCTGTGGGTGCGGATCAACCCGTTCCTAGCCAGAGGCGGCATCGTATTGGAGGTTTGTGGATTAAATTGCGATAACGATTAA 3282 44.09 MDTKGRLIAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDEIEFTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVEGDEEEEDVDDLENEFDISSKDPHYIAEQMLSSHLNVGRGSQINGYHMSSELDASSPPMNIPLLTYDQETNFKDAGISSDKHALIIPPFISRGKRVHPMPYTDNSVTVQPRPMDPKKDLAVYGYGTVAWKERMEEWKRKQNEKLQVVKHEGDGGNEFDDPDLPMMDEGRQPLSRKLPISSSKINPYRLIILLRIAILGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWCPIVRETYLDRLSLRYEKEGKPSELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRAPEWYFAQKVDYLKDKVDPAFIRERRAIKREYEEFKVRINSLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVCDLEGNELPRLVYVSREKRPGFDHHKKAGAMNALVRVSAIISNAPYMLNVDCDHYINNSKALREAMCFMMDPICGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPAKKKAPQRTCNCWPKWCCLCCGSRKKNNKKGKTMDKKKSKNKDGSKQIHALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSAVFIASTLKENGGVPEGVTSASLLKEAIHVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRAAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKWLERFSYINSVVYPLTSIPLIAYCTLPAVCLLTGKFIVPELSDYASIIFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGVSAHLFALFQGLLKVLAGINTNFTVTSKAADDGEFSELYLFKWTSLLIAPMSLLIINIIGVIVGISDAINNGYDSWGPLIGKLFFAFWVIVHLYPFLKGLMGKQDKVPTIIIVWSILLSSIFSLLWVRINPFLARGGIVLEVCGLNCDND 1093
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8572037 8576996 - Bda005623.1 Bda11g00870 15978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00870 1093 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 517 658 IPR029044 -
Bda11g00870 1093 MobiDBLite consensus disorder prediction 682 702 - -
Bda11g00870 1093 Pfam Zinc-binding RING-finger 30 106 IPR027934 -
Bda11g00870 1093 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1090 - -
Bda11g00870 1093 PANTHER CELLULOSE SYNTHASE 1 1090 - -
Bda11g00870 1093 SUPERFAMILY RING/U-box 28 107 - -
Bda11g00870 1093 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Bda11g00870 1093 SUPERFAMILY Nucleotide-diphospho-sugar transferases 376 905 IPR029044 -
Bda11g00870 1093 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 112 IPR013083 -
Bda11g00870 1093 Pfam Cellulose synthase 363 1078 IPR005150 GO:0016020|GO:0016760|GO:0030244
Bda11g00870 1093 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00065 Bda-Chr3:718275 Bda11g00870 Bda-Chr11:8572037 0 dispersed
Bda10g00721 Bda-Chr10:41633154 Bda11g00870 Bda-Chr11:8572037 0 dispersed
Bda11g00039 Bda-Chr11:481523 Bda11g00870 Bda-Chr11:8572037 0 dispersed
Bda11g00870 Bda-Chr11:8572037 Bda14g01064 Bda-Chr14:9146473 0 dispersed
Bda11g00870 Bda-Chr11:8572037 Bda01g00738 Bda-Chr1:34669730 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00870 K10999 - csv:101214061 1973.36