Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00871 ATGGCCGAGGAGAAGCTCCACGACCTCTTCCACCACAAGAAGGATGACGACGACGGCGACTACGAGAAGGAGGAGAAGCACCACAAACATCTCGAACATCTAGGCGAGCTGGGCACCGCCGCCGCCGGAGCTTTTGCCTTGCACGAGAAGCACGAAGTGAAGAAAGACCCGGAGCACGGGCACAGGCATAAGATGGAAGAAGAAATAGCGACGGCGATGGCGGCTGGGTCGGGAGGGTATGCATTCCACGAGCGCCACGACAAGAAGGAGGCAAAGGAAGAAGACGAAGAGGCTCATGGAAAGAAGAAGCACCACCTTTTTTAA 324 56.17 MAEEKLHDLFHHKKDDDDGDYEKEEKHHKHLEHLGELGTAAAGAFALHEKHEVKKDPEHGHRHKMEEEIATAMAAGSGGYAFHERHDKKEAKEEDEEAHGKKKHHLF 107
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8584600 8584997 - Bda005624.1 Bda11g00871 15979

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00871 107 MobiDBLite consensus disorder prediction 83 107 - -
Bda11g00871 107 PANTHER ABSCISIC STRESS-RIPENING PROTEIN 5 3 107 - -
Bda11g00871 107 MobiDBLite consensus disorder prediction 1 28 - -
Bda11g00871 107 PANTHER ABSCISIC STRESS-RIPENING PROTEIN 5 3 107 IPR003496 -
Bda11g00871 107 Pfam ABA/WDS induced protein 20 97 IPR003496 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00871 - - - qsu:112028554 133.265
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00862 Bda-Chr1:41290118 Bda11g00871 Bda-Chr11:8584600 1.93E-28 dispersed
Bda11g00871 Bda-Chr11:8584600 Bda13g01429 Bda-Chr13:36996261 2.38E-27 dispersed
Bda11g00871 Bda-Chr11:8584600 Bda03g00396 Bda-Chr3:3274092 1.77E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1361 Blo01g01731 Blo12g00782 . . . . Bma04g00376 Bma01g02510 . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1489 Cone7ag1455 . . . . . . . . Bda11g00871 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018061 1 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00871 Bda_Chr11 FPKM 11.442507 10.691054 24.273041 25.017153 7.509802 7.735366 7.61428 13.752979 11.83255