Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00872 TCAAAGCTGATGGCGTCGTCGAATTCGATTAACTCGGATCCACCGCGACGCGCTTCGTCTTCTTCTTCCTCCGCTAGGAAAAGGAAAGCTCAATCTCATCAGAGCAAGCGGAACGCCAAAATTAATCAGAATCAAAGCCATAATTTCGCCTCTATGACCGTTGATGGCCTCCTCCGCAATGTCCATGACTCCAATCCTGCTACTGACTCCACCTTACTTGAAGCTCAGATAATCTTAGTGGATCCCTCTAACCTGAAAAACGCCTCTCCCGCCTTCAGTGGCAATCCTAATAATAGCTCCTCTATCGACCCCAAAACTGTCGATGATGTGTGGAGGGACATTGTATCCGGCACTTGCAAGGAGTTGAAGGAGGAGTGCCCTGACGATATGATGACGCTGGAGGATTTTCTGGCCACAGCCGGGGCCGTGGACAGTGTCGAACTGAAGGTACCACCGTCCGAGAGATTCAGTGAGGGGATGATAGCGTTTGATCCTGTCCTTCCTAGTCCACTTCAATCTCTGGATAAAGTTGAGGGGGCAATTGTTGCTTATGGAAACGGAATGGATGTGTTTGGCAGTGGAGGAAGTGGGAGATTAAAGAGAGTTAGGTCTCTTTTAGACCCATTAGATAAGGCTGCTCAGCAGCGGGAAAAAAGGATGATCAAGAACAGGGAGTCGGCAGCGAGGTCCAGGGAAAGGAAGCAGGCATATCAAGCTGAGTTGGAGTCTTTAGCAGTGAGACTAGAGGAGGAAAACGAACAGTTATTAAAGGAAAAGGTACTGCATTTATTGATGGAGAATATAATCCCGGTTGTTGAAAAGAAGCGGAGGCCACCTCGTTTGCTTAGGAGAGTTCAATCCATGGAATGGTAG 873 48.34 SKLMASSNSINSDPPRRASSSSSSARKRKAQSHQSKRNAKINQNQSHNFASMTVDGLLRNVHDSNPATDSTLLEAQIILVDPSNLKNASPAFSGNPNNSSSIDPKTVDDVWRDIVSGTCKELKEECPDDMMTLEDFLATAGAVDSVELKVPPSERFSEGMIAFDPVLPSPLQSLDKVEGAIVAYGNGMDVFGSGGSGRLKRVRSLLDPLDKAAQQREKRMIKNRESAARSRERKQAYQAELESLAVRLEEENEQLLKEKVLHLLMENIIPVVEKKRRPPRLLRRVQSMEW 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8586249 8588311 + Bda005625.1 Bda11g00872 15980

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00872 290 CDD bZIP_plant_BZIP46 215 266 - -
Bda11g00872 290 Pfam bZIP transcription factor 213 258 IPR004827 GO:0003700|GO:0006355
Bda11g00872 290 PANTHER BASIC LEUCINE ZIPPER TRANSCRIPTION FACTOR 5 289 - -
Bda11g00872 290 Gene3D - 213 266 - -
Bda11g00872 290 SUPERFAMILY Leucine zipper domain 215 258 IPR046347 GO:0003700|GO:0006355
Bda11g00872 290 MobiDBLite consensus disorder prediction 1 48 - -
Bda11g00872 290 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 5 289 IPR043452 GO:0003700|GO:0045893
Bda11g00872 290 Coils Coil 227 258 - -
Bda11g00872 290 SMART brlzneu 211 269 IPR004827 GO:0003700|GO:0006355
Bda11g00872 290 MobiDBLite consensus disorder prediction 1 28 - -
Bda11g00872 290 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 218 233 IPR004827 GO:0003700|GO:0006355
Bda11g00872 290 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 213 258 IPR004827 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00872 K14432 ABF; ABA responsive element binding factor - zju:107421670 311.227
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g00393 Bda11g00872 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00872 Bda-Chr11:8586249 Bda14g00018 Bda-Chr14:164504 1.04E-12 dispersed
Bda11g00872 Bda-Chr11:8586249 Bda03g00393 Bda-Chr3:3243371 6.30E-130 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1370 Blo01g01730 . . Bda03g00393 Bpe02g00211 Bpe04g00355 Bma04g00371 Bma01g02509 Cmo04g02568 Cmo15g00598 . . Car01g00864 . . . . . . . . . . . . . . . . . . Cone4ag1498 Cone7ag1450 . . . . . . . . Bda11g00872 . . . . . . . . . . Car04g02360 Car15g00550 Cpe01g02120 . . . . . . . . . . . . . . . . . Chy03g00502 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003827 2 1 1 2 2 1 2 0 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 6 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16631 PF00170 bZIP_1 2.70E-13 CL0018 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00872 Bda_Chr11 FPKM 0.315934 0.822971 0.0 0.0 0.589391 0.538459 0.0 1.027265 1.282991