Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda11g00874 | ATGTCATTCCGCAGTATAGTACGCGATGTTAGGGATGGATTTGGAAGCTTTTCAAGGCGTAGTTTCGAGGTGAGGATCCCCGGCCACTACAGAGGGAAATCCCATGGGGCTGTCCATGAGTTGCACGATCACCCTCTTGTAATCCAAACCAGCCGATGGGCTAGTCTCCCACCTGAGCTATTGAGGGAGATGATAAAAAGATTGGAGGCTAGTGAGAGTACATGGCCGGCACGAAAGCATGTTGTCGCTTGTGCTTCTGTATGCAGATCATGGAGAGATATGTGCAAGGAAATCGTCCAAAGTCCAGAGTTTTCCGGCAAAATCACATTTCCTGTCTCCTTGAAGCAGCCAGGGTCTCGAGATGGAACTATTCAGTGCTTCATTAAGAGGGATAAAGCTAATTTAACTTACCGGCTTTTTCTTTGCCTCAGTCCTGGTAAGTTACTCATTTTATTTGAGGAACACTGCAATTTATTTCTTGTTGGATCGGAATTGCAAGTTCTTTTTTCCATGCAATATCTGAAACTTTCTCGACCAATTTTCCTAATACTAATGCTTTTATGGTTTTTCAGGTCAAATTTTTTGGGGACGAAATTCTTAATATTCGATACCCAACCTCCTTACAATAACGTGCAACTCTCCCCACCGGGTCGAAGCCGAAGATTTTACTCGAAGAAAGTTTCTCCAAAAGTGCCTGCTGGCAGTTACAACATTGCCGAGGTTACATACGAGCTGAATGTTTTAGGCACGCGCGGCCCACGCAGGATGCACTGCACCATGCATTCGATCCCCGTCTCAGCCATCGAGCCGGGAGGCTCCATCCCTGGCCAGCCGGAGCTCCTGGCCAGGTCCCTCGAGGACTCCTTCCGAAGCATTTCCTTCTCTAAAGTCGACAACTGCTCCGAGTTTAGCAGTTCTCGGTTCTCAGACATTGTTAGGTCAAACGAAGAACAAGAAGATGGTACAAAAGAGGAGATTCGGCCATTGATTCTTAAGAACAAAGCACCCCGTTGGCACGAACAGTTGCAGTGTTGGTGCCTTAACTTCCGAGGGCGGGTGACTGTCGCCTCTGTCAAGAACTTTCAGCTGATAGCAGCCGAGGAATCACCTCCAGGGCCCCCTGCCCAGCCGCCCCAGTCAGACCATGACAAGATCATTCTTCAGTTTGGCAAGGTTGGAAAAGATATGTTCACCATGGATTATAGATATCCTTTATCTGCATTTCAAGCTTTTGCCATCTGTTTGAGCAGCTTCGACACGAAATTGGCCTGTGAATAG | 1278 | 47.5 | MSFRSIVRDVRDGFGSFSRRSFEVRIPGHYRGKSHGAVHELHDHPLVIQTSRWASLPPELLREMIKRLEASESTWPARKHVVACASVCRSWRDMCKEIVQSPEFSGKITFPVSLKQPGSRDGTIQCFIKRDKANLTYRLFLCLSPGKLLILFEEHCNLFLVGSELQVLFSMQYLKLSRPIFLILMLLWFFRSNFLGTKFLIFDTQPPYNNVQLSPPGRSRRFYSKKVSPKVPAGSYNIAEVTYELNVLGTRGPRRMHCTMHSIPVSAIEPGGSIPGQPELLARSLEDSFRSISFSKVDNCSEFSSSRFSDIVRSNEEQEDGTKEEIRPLILKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAEESPPGPPAQPPQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE | 425 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 8595125 | 8598560 | - | Bda005627.3 | Bda11g00874 | 15982 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda11g00874 | 425 | ProSitePatterns | Tub family signature 2. | 410 | 425 | IPR018066 | - | |
Bda11g00874 | 425 | PRINTS | Tubby superfamily signature | 235 | 262 | IPR000007 | - | |
Bda11g00874 | 425 | PRINTS | Tubby superfamily signature | 186 | 210 | IPR000007 | - | |
Bda11g00874 | 425 | PRINTS | Tubby superfamily signature | 331 | 348 | IPR000007 | - | |
Bda11g00874 | 425 | PRINTS | Tubby superfamily signature | 403 | 425 | IPR000007 | - | |
Bda11g00874 | 425 | PRINTS | Tubby superfamily signature | 349 | 365 | IPR000007 | - | |
Bda11g00874 | 425 | PRINTS | Tubby superfamily signature | 382 | 401 | IPR000007 | - | |
Bda11g00874 | 425 | PANTHER | TUBBY-LIKE F-BOX PROTEIN 10-RELATED | 1 | 425 | - | - | |
Bda11g00874 | 425 | SUPERFAMILY | Tubby C-terminal domain-like | 102 | 425 | IPR025659 | - | |
Bda11g00874 | 425 | PANTHER | TUBBY-RELATED | 1 | 425 | - | - | |
Bda11g00874 | 425 | ProSitePatterns | Tub family signature 1. | 349 | 362 | IPR018066 | - | |
Bda11g00874 | 425 | Gene3D | Tubby Protein; Chain A | 112 | 419 | IPR025659 | - | |
Bda11g00874 | 425 | Pfam | Tub family | 114 | 420 | IPR000007 | - | |
Bda11g00874 | 425 | SUPERFAMILY | F-box domain | 49 | 96 | IPR036047 | GO:0005515 | |
Bda11g00874 | 425 | Gene3D | - | 48 | 101 | - | - | |
Bda11g00874 | 425 | Pfam | F-box domain | 53 | 99 | IPR001810 | GO:0005515 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bda03g00391 | Bda11g00874 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda11g00874 | Bda-Chr11:8595125 | Bda15g00463 | Bda-Chr15:7706302 | 0 | dispersed | |
Bda11g00874 | Bda-Chr11:8595125 | Bda03g00391 | Bda-Chr3:3234059 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16632 | PF01167 | Tub | 2.40E-91 | CL0395 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda11g00874 | K19600 | - | qsu:111992792 | 656.751 |