Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00874 ATGTCATTCCGCAGTATAGTACGCGATGTTAGGGATGGATTTGGAAGCTTTTCAAGGCGTAGTTTCGAGGTGAGGATCCCCGGCCACTACAGAGGGAAATCCCATGGGGCTGTCCATGAGTTGCACGATCACCCTCTTGTAATCCAAACCAGCCGATGGGCTAGTCTCCCACCTGAGCTATTGAGGGAGATGATAAAAAGATTGGAGGCTAGTGAGAGTACATGGCCGGCACGAAAGCATGTTGTCGCTTGTGCTTCTGTATGCAGATCATGGAGAGATATGTGCAAGGAAATCGTCCAAAGTCCAGAGTTTTCCGGCAAAATCACATTTCCTGTCTCCTTGAAGCAGCCAGGGTCTCGAGATGGAACTATTCAGTGCTTCATTAAGAGGGATAAAGCTAATTTAACTTACCGGCTTTTTCTTTGCCTCAGTCCTGGTAAGTTACTCATTTTATTTGAGGAACACTGCAATTTATTTCTTGTTGGATCGGAATTGCAAGTTCTTTTTTCCATGCAATATCTGAAACTTTCTCGACCAATTTTCCTAATACTAATGCTTTTATGGTTTTTCAGGTCAAATTTTTTGGGGACGAAATTCTTAATATTCGATACCCAACCTCCTTACAATAACGTGCAACTCTCCCCACCGGGTCGAAGCCGAAGATTTTACTCGAAGAAAGTTTCTCCAAAAGTGCCTGCTGGCAGTTACAACATTGCCGAGGTTACATACGAGCTGAATGTTTTAGGCACGCGCGGCCCACGCAGGATGCACTGCACCATGCATTCGATCCCCGTCTCAGCCATCGAGCCGGGAGGCTCCATCCCTGGCCAGCCGGAGCTCCTGGCCAGGTCCCTCGAGGACTCCTTCCGAAGCATTTCCTTCTCTAAAGTCGACAACTGCTCCGAGTTTAGCAGTTCTCGGTTCTCAGACATTGTTAGGTCAAACGAAGAACAAGAAGATGGTACAAAAGAGGAGATTCGGCCATTGATTCTTAAGAACAAAGCACCCCGTTGGCACGAACAGTTGCAGTGTTGGTGCCTTAACTTCCGAGGGCGGGTGACTGTCGCCTCTGTCAAGAACTTTCAGCTGATAGCAGCCGAGGAATCACCTCCAGGGCCCCCTGCCCAGCCGCCCCAGTCAGACCATGACAAGATCATTCTTCAGTTTGGCAAGGTTGGAAAAGATATGTTCACCATGGATTATAGATATCCTTTATCTGCATTTCAAGCTTTTGCCATCTGTTTGAGCAGCTTCGACACGAAATTGGCCTGTGAATAG 1278 47.5 MSFRSIVRDVRDGFGSFSRRSFEVRIPGHYRGKSHGAVHELHDHPLVIQTSRWASLPPELLREMIKRLEASESTWPARKHVVACASVCRSWRDMCKEIVQSPEFSGKITFPVSLKQPGSRDGTIQCFIKRDKANLTYRLFLCLSPGKLLILFEEHCNLFLVGSELQVLFSMQYLKLSRPIFLILMLLWFFRSNFLGTKFLIFDTQPPYNNVQLSPPGRSRRFYSKKVSPKVPAGSYNIAEVTYELNVLGTRGPRRMHCTMHSIPVSAIEPGGSIPGQPELLARSLEDSFRSISFSKVDNCSEFSSSRFSDIVRSNEEQEDGTKEEIRPLILKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAEESPPGPPAQPPQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8595125 8598560 - Bda005627.3 Bda11g00874 15982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00874 425 ProSitePatterns Tub family signature 2. 410 425 IPR018066 -
Bda11g00874 425 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Bda11g00874 425 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Bda11g00874 425 PRINTS Tubby superfamily signature 331 348 IPR000007 -
Bda11g00874 425 PRINTS Tubby superfamily signature 403 425 IPR000007 -
Bda11g00874 425 PRINTS Tubby superfamily signature 349 365 IPR000007 -
Bda11g00874 425 PRINTS Tubby superfamily signature 382 401 IPR000007 -
Bda11g00874 425 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 425 - -
Bda11g00874 425 SUPERFAMILY Tubby C-terminal domain-like 102 425 IPR025659 -
Bda11g00874 425 PANTHER TUBBY-RELATED 1 425 - -
Bda11g00874 425 ProSitePatterns Tub family signature 1. 349 362 IPR018066 -
Bda11g00874 425 Gene3D Tubby Protein; Chain A 112 419 IPR025659 -
Bda11g00874 425 Pfam Tub family 114 420 IPR000007 -
Bda11g00874 425 SUPERFAMILY F-box domain 49 96 IPR036047 GO:0005515
Bda11g00874 425 Gene3D - 48 101 - -
Bda11g00874 425 Pfam F-box domain 53 99 IPR001810 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda03g00391 Bda11g00874 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00874 Bda-Chr11:8595125 Bda15g00463 Bda-Chr15:7706302 0 dispersed
Bda11g00874 Bda-Chr11:8595125 Bda03g00391 Bda-Chr3:3234059 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16632 PF01167 Tub 2.40E-91 CL0395 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00874 K19600 - qsu:111992792 656.751