Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00878 ATGGATCACGCAGCGGAAGCGATGAGGACGGATTTGATGACTATTACTCGCTTCGTTTTGAACGAGCAGTCGAAACACCCGGACTCTCGCGGTGACTTTACCATTTTGCTCAATCATATTGTTCTTGGCTGCAAGTTCGTCTGCTCTGCCGTCAACAAGGCGGGTCTTGCAAAACTAATTGGATTAGCTGGTGAAACCAATGTTCAGGGTGAAGAACAAAAGAAGCTAGATGTTCTATCCAATGAAGTTTTTATTAAGGCTTTGGTTAGCAGTGGGCGAACATGCATCCTTGTTTCCGAAGAAGATGAAGAGGCAACATTTGTGGATCCCTCTCTTCGAGGAAGGTACTGTGTGGTTTTTGATCCACTGGATGGATCCTCCAACATTGATTGTGGTGTTTCCATCGGAACGATATTTGGGATTTACCATGTGAAAGATAGTGCTCAACCTACCTTAGATGACGTTTTGGGACCTGGAACAAATATGGTAGCAGCCGGGTACTGCATGTATGGAAGCTCCTGCACTCTTGTTTTAAGTACCGGAACTGGTGCGCATGGATTCACTCTTGATCCTTCTCTGGGAGAGTTCATTCTGACTCACCCAGACATAAAGATTCCAAAAAAAGGAAAGATTTATTCAGTAAATGAAGGAAATGCAAAGAACTGGGATGGCCCTACCTCCAAGTATGCTGAACTGAGTTTGATTAACCTTCAGTGTTCAAAACTTATCCATGAAATTCACCCATGCAATTTCAGGTTTGTGGAAAAGTGCAAATTTCCTATAGATGGATCATCACCAAAATCCCTACGGTACATTGGAAGCATGGTAGCTGATGTTCATCGTACACTGCTTTATGGTGGTATCTTCTTGTACCCTGCTGATAAGAAAAGCCCAAACGGAAAACTGCGTGTTCTCTACGAAGTTTTTCCAATGTCATTTTTGATGGAGCAAGCTGGAGGTCAGGCCTTCACTGGGAAGCAAAGGGCATTGGACTTGGTTCCTAAAAAGATACACGAGAGATCGCCCATATTTCTTGGCAGCTATGACGATGTGGAGGAAATCAAAGCACTCTATGCTGCCGCAGGGAACTAA 1092 44.05 MDHAAEAMRTDLMTITRFVLNEQSKHPDSRGDFTILLNHIVLGCKFVCSAVNKAGLAKLIGLAGETNVQGEEQKKLDVLSNEVFIKALVSSGRTCILVSEEDEEATFVDPSLRGRYCVVFDPLDGSSNIDCGVSIGTIFGIYHVKDSAQPTLDDVLGPGTNMVAAGYCMYGSSCTLVLSTGTGAHGFTLDPSLGEFILTHPDIKIPKKGKIYSVNEGNAKNWDGPTSKYAELSLINLQCSKLIHEIHPCNFRFVEKCKFPIDGSSPKSLRYIGSMVADVHRTLLYGGIFLYPADKKSPNGKLRVLYEVFPMSFLMEQAGGQAFTGKQRALDLVPKKIHERSPIFLGSYDDVEEIKALYAAAGN 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8625538 8628528 - Bda005631.1 Bda11g00878 15986

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00878 363 PRINTS Fructose-1,6-bisphosphatase signature 212 239 IPR028343 GO:0042132
Bda11g00878 363 PRINTS Fructose-1,6-bisphosphatase signature 75 101 IPR028343 GO:0042132
Bda11g00878 363 PRINTS Fructose-1,6-bisphosphatase signature 38 65 IPR028343 GO:0042132
Bda11g00878 363 PRINTS Fructose-1,6-bisphosphatase signature 155 178 IPR028343 GO:0042132
Bda11g00878 363 PRINTS Fructose-1,6-bisphosphatase signature 186 209 IPR028343 GO:0042132
Bda11g00878 363 Gene3D - 204 362 - -
Bda11g00878 363 Hamap Fructose-1,6-bisphosphatase class 1 [fbp]. 13 360 IPR000146 GO:0005975|GO:0016791
Bda11g00878 363 PANTHER FRUCTOSE-1,6-BISPHOSPHATASE, CYTOSOLIC-LIKE 252 361 - -
Bda11g00878 363 PANTHER FRUCTOSE-1,6-BISPHOSPHATASE, CYTOSOLIC-LIKE 2 232 - -
Bda11g00878 363 PANTHER FRUCTOSE-1,6-BISPHOSPHATASE-RELATED 252 361 IPR000146 GO:0005975|GO:0016791
Bda11g00878 363 PANTHER FRUCTOSE-1,6-BISPHOSPHATASE-RELATED 2 232 IPR000146 GO:0005975|GO:0016791
Bda11g00878 363 SUPERFAMILY Carbohydrate phosphatase 6 358 - -
Bda11g00878 363 PIRSF FBPtase_SBPase 9 239 IPR000146 GO:0005975|GO:0016791
Bda11g00878 363 PIRSF FBPtase_SBPase 243 362 IPR000146 GO:0005975|GO:0016791
Bda11g00878 363 Gene3D - 4 203 - -
Bda11g00878 363 Pfam Fructose-1-6-bisphosphatase, C-terminal domain 205 358 IPR044015 -
Bda11g00878 363 CDD FBPase 20 358 IPR000146 GO:0005975|GO:0016791
Bda11g00878 363 Pfam Fructose-1-6-bisphosphatase, N-terminal domain 13 201 IPR033391 -
Bda11g00878 363 ProSitePatterns Fructose-1-6-bisphosphatase active site. 300 312 IPR020548 GO:0005975|GO:0042578
Bda11g00878 363 PIRSF FBPtase 9 241 IPR028343 GO:0042132
Bda11g00878 363 PIRSF FBPtase 243 362 IPR028343 GO:0042132
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00878 K03841 FBP, fbp; fructose-1,6-bisphosphatase I [EC:3.1.3.11] - tcc:18592577 625.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00279 Bda-Chr5:44392029 Bda11g00878 Bda-Chr11:8625538 1.20E-105 dispersed
Bda11g00878 Bda-Chr11:8625538 Bda13g00882 Bda-Chr13:10447762 1.93E-71 dispersed
Bda11g00878 Bda-Chr11:8625538 Bda03g00805 Bda-Chr3:6834222 4.56E-56 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1386 Blo01g01724 . . . . . . Bma01g02503 . . . . Car01g00893 . . Cpe06g00880 . . . . . . . . Cla08g00367 Cam08g0791 Cec08g0351 Cco08g0459 Clacu08g0504 . Cre08g0333 . . . Cone20ag0383 . . . . . . Bda11g00878 . . . . . . Cmo01g01050 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008203 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 0 1 1 1 1 3 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00878 Bda_Chr11 FPKM 1.529282 1.657422 1.090472 0.977346 3.42271 2.718321 3.624684 1.482233 1.465303