Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda11g00879 | ATGGGTCGAAAGAAGCCGAATGCTCGGGAGGATGATGTGCCTGCACCAGCGACTGCTCAGGGAGGGGGTAAAGCAAAGAAGAAGGCGCTTTTAATAGACGACGACGAGTATTCCATTGGAACAGAAATATCTGAGGACTCGCAAGTTCAGGAGGAGACGGTTGCAACCACGGGGAAGAAGAAGGGTAGAAAGGGTAACTTAAAAGCTTCACAATCAAAAGACGAAGAAGAGGATGATGACTTTGTGCCGGAGATTGTTATCACTGGGAAAAAGAAGGGAAAATCAAAGAAGGGTGGTGGAAACAGCGTGTTTGGCGCATCAAGCTTTGGTTTGCTTGGGGAGGAAAACAATGTAGATGATGATGATGATGATGAACACTCTGTTTTATCTGGTGAGAAGGATAATGATGAAGAGGATGTTCCGGTTGTAAGCTTTTCAGGTAAGAAAAAAGGATCGAGGAATTCTAAGAAAAAAGATAATTTGTTTAAAGACTCGTCGGCATTTGATGCCATTGATGATGAGAATGATGGAGAAGTGAGTGATAGTGAGAGTAGGATTGACAAAGATGATGATGAGATTGTGCCAGTTATAACCGGAAGGAAGAAGCCATCCAAAGGTGGAAAGACAAGTAGGAGTACATTTCAAGCTTCAAATTTTGGTGGACTAGATGAGGACGATGATAAGGATGAAAAGAAAGATGTGGATGAAGATGTTGCTCCTATTAGTTTCTCTGGTTTGAAAAAGAAGTCTTCCAATGCAACAAAGAGGAGTGGTAATCTTTTTAGTTTGGCAGTTATCGACGATGCTGGTGATGAAGGTCCTTCTGTATCAGAATCAAGCAGAGCTGGTGATGATCTCGTTGAGGATGAAGATGCCTCAGTTATTGCATTTTCTGGCAAGAAAAAGTCCTCAAAGAAGAAAAGTAATAGTGTTTTTGCTTCATTGGATGACATGAGTGCACTTGAAAGTGGAGTTGGAATTGGAGTTGAACCTGATGTACTGAGTGGTGGATCTAGTTATGTTGATGCTGACACCTCTGTGACCATCACGAAAGAGGTTGCAGAGTCCTCAAAAAATAAGAAAAAGAAGAAAAAGAGTGGAAGGACTGCTCAAGAGGAAGATGATTTGGATAAAATTCTTGCAGAACTCGGTGAGGGACTGGCAGTACCAAAATCTGTTGTATCTGCTTCTCTTCCTCCAGAAGAGGTGAAATCTGATGTTCAACCTGAACCAGCTCTGCTTGTTGATGCGCCTGTGGAGAAGGAAGGTGAAGAAGAAAGTATGGAGTCGGCTGCAGCAAAGAAGAAGAAAAAGAAGAAGGAGAAGGAGAAGGAAAAGAAGGCTGCTGCAGCTGCTGTGGCAGCAGCTGCAGATGAGAAGGCTGAAATAACTGAAGAAGTAAAAATTGAGATGGCAGAGCCTAAAAAAGGCACTGCTAAGAGTAAAGTTCCTGAGAAGAAAGTACCAAAGCATGTTAGGGAAATGCAGGAGGCAATGGCGAGGAGAAAAGAAGAGGAAGAAAGGAAAAAGAGGGAAGAAGAAGAGAAGTTGAGGAAGGAAGAGGAGGAAAGGCTTAGGCAAGAGGAACTTGAGAGGCAAGCAGAAGAAGCAAAGAGAAGGAAAAAAGAAAAAGAAAAGGAGAAGCTTCAGAGGAAGAAGTTGGAAGGCAAGCTTTTGACGGGGAAGCAAAAGGAAGAACAGCGTAGGTTACAGGCAATGAAGAACCAATTTCTTGCAAACAGTGTGGGTTTGGCTCTTCCTGTTGCTGACTCTGGTGCACCAGTCAAACGACCCATTTACCAGACAAAGAAGACCAAAACAGCCCAACATCAAGCAAGTAGCGATGCATCTAAGGTAGTCGAGAACATAGAAGAAATTAAAAATCAGCCGGACCATGTGGCAGAGGTTGAATCTGTAGAGTTGAAAAAGATGGAAGATGTGGAAACAGTGAATGTGGATGAGAAATCTGAAATTTCTGAGCCTGTAGAAGATAATGGGATGGAAGAAGAAGATGACGACGAGGATGAATGGGATGCAAAGAGCTGGGATGATGCTGTCGTTGATCTTACTGTGAAAAGTGCATTTGCTCATGAAGAAGTTGACTCTGAAACAGAACTCGTGGTGAAAAAAGAGAAAAAGAGTGGCACATCAATTTTTGACCTTGCTGCTACAAATGTTGGCAGCACACCAGCTCTTTCTGTCAACCACAGTTTTTCTTCTAAGGATGTTGAAGTTAGCAAAAAGCAGTCTGAGGTGGAAGTTGTGGATAATAACAAAAGAAAAAATGCTGTTGTTAAGAAGGAAGCTCCAAGATTAGATACTGCGTCTAAAAATAGTGAAAGTAATCTCCGTTCTCCTATTTGCTGTATTATGGGTCACGTTGACACTGGTAAAACCAAGCTTCTGGATTGTATCCGAGGAACTAATGTTCAAGAAGGTGAGGCTGGAGGTATTACCCAACAAATTGGAGCGACTTATTTTCCTGCAGAAAACATACGTGAAAGAACTAGAGAATTGAAAGCAGATGCATCTTTGAAAGTTCCTGGTCTACTTGTTATTGATACCCCTGGACATGAATCTTTCACCAACCTACGATCCCGCGGTTCTGGTTTATGTGATATCGCAATTTTAGTTGTTGACATCATGCATGGTTTAGAGCCGCAAACAATAGAATCACTCAATTTATTGAAAATGAGGGACACAGAATTCATTGTTGCATTGAACAAGGTGGATAGACTGTATGGGTGGAAAACATGTCGAAATGCTCCAATTGTGAAGACAATGAAGCAACAATCAAAGGACGTGCAGAATGAGTTCAATATGAGGCTCACACAGATTATCACTCAATTCAAAGAACAAGGTTTAAATACTGAATTATACTATAAAAATAAAGAAATGGGGGAAACTTTCAGTATAGTACCAACAAGTGCTATAAGTGGGGAAGGTATTCCAGATTTGTTATTACTACTGGTCCAGTGGTCTCAGAAAACTATGGTTGAAAAGCTTACTTACAGTGATGAAGTGCAGTGTACGGTGTTGGAGGTTAAGGTGGTTGAAGGCCATGGGACAACCATCGATGTTGTATTAGTTAATGGCGTGCTTCATGAAGGAGACCAAATAGTTGTTTGCGGAATGCAGGGTCCAATTGTTACTTCAATTCGGGCGCTATTGACACCACATCCAATGAAGGAACTCCGAGTTAAGGGCACATATCTGCATCATAAGCAAATTAAGGCTGCCCAAGGCATTAAGATTACAGCACAGGGCCTTGAGCATGCTATTGCCGGAACTGGTCTTTATGTGGTAGGTCCTGGCGACGACTTGGAAGACATTAAAGAATCAGCCATGGAAGATATGAAGTCTGTCTTGAATAGGATTGACAAGAGTGGCGAAGGGGTTTGTGTGCAAGCATCTACACTGGGTTCGTTGGAGGCATTGCTGGAGTTTTTGAAGTCTCCTGCTGTTAACATTCCTGTCAGTGGAATAAGCATTGGTCCTGTACATAAAAAAGATGTTATGAAGGCCAGTGTGATGCTTGAAAAGAAGAAGGAATATGCCACTATCTTGGCTTTTGATGTCAAAGTGACACCAGAGGCCCGTGAGCTTTCCGAGGAACTGGGTGTGAAGATTTTTATGGCGGACATCATTTATCACTTGTTTGATCAGTTTAAGGCATACATTGACAATATTAAAGAGGAAAAGAAGAAGGAAGCTGCTGAGGAAGCAGTATTTCCATGTGTCCTTAAGATTCTACCAAATTGTATTTTCAATAAGAAGGATCCAATCGTCTTGGGAGTGGATGTACTTGAAGGCATTGCCAAGGTTGGAACTCCTATTTGTATACCTCAAAGAGAGTTTATTGATATTGGCCGCATCGCATCTATTGAAAACAACCATAAACCTGTTGATACAGCAAAGAAAGGACAGAAAGTAGCCATTAAGATAGTTGGCTCTTCCCCAGAGGAGCAGCAAAAGATGTTTGGTAGGCATTTTGAGCTCGAAGATGAACTTGTTAGTCATATCTCAAGGAAATCAATAGATCTGCTCAAACTCAATTATCGGGATGATTTGTCCATCGAGGAGTGGAGGCTGGTGGTGAAATTGAAGACTCTTTTCAAGATACAATGA | 4128 | 41.86 | MGRKKPNAREDDVPAPATAQGGGKAKKKALLIDDDEYSIGTEISEDSQVQEETVATTGKKKGRKGNLKASQSKDEEEDDDFVPEIVITGKKKGKSKKGGGNSVFGASSFGLLGEENNVDDDDDDEHSVLSGEKDNDEEDVPVVSFSGKKKGSRNSKKKDNLFKDSSAFDAIDDENDGEVSDSESRIDKDDDEIVPVITGRKKPSKGGKTSRSTFQASNFGGLDEDDDKDEKKDVDEDVAPISFSGLKKKSSNATKRSGNLFSLAVIDDAGDEGPSVSESSRAGDDLVEDEDASVIAFSGKKKSSKKKSNSVFASLDDMSALESGVGIGVEPDVLSGGSSYVDADTSVTITKEVAESSKNKKKKKKSGRTAQEEDDLDKILAELGEGLAVPKSVVSASLPPEEVKSDVQPEPALLVDAPVEKEGEEESMESAAAKKKKKKKEKEKEKKAAAAAVAAAADEKAEITEEVKIEMAEPKKGTAKSKVPEKKVPKHVREMQEAMARRKEEEERKKREEEEKLRKEEEERLRQEELERQAEEAKRRKKEKEKEKLQRKKLEGKLLTGKQKEEQRRLQAMKNQFLANSVGLALPVADSGAPVKRPIYQTKKTKTAQHQASSDASKVVENIEEIKNQPDHVAEVESVELKKMEDVETVNVDEKSEISEPVEDNGMEEEDDDEDEWDAKSWDDAVVDLTVKSAFAHEEVDSETELVVKKEKKSGTSIFDLAATNVGSTPALSVNHSFSSKDVEVSKKQSEVEVVDNNKRKNAVVKKEAPRLDTASKNSESNLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADASLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRDTEFIVALNKVDRLYGWKTCRNAPIVKTMKQQSKDVQNEFNMRLTQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAISGEGIPDLLLLLVQWSQKTMVEKLTYSDEVQCTVLEVKVVEGHGTTIDVVLVNGVLHEGDQIVVCGMQGPIVTSIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPGDDLEDIKESAMEDMKSVLNRIDKSGEGVCVQASTLGSLEALLEFLKSPAVNIPVSGISIGPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEARELSEELGVKIFMADIIYHLFDQFKAYIDNIKEEKKKEAAEEAVFPCVLKILPNCIFNKKDPIVLGVDVLEGIAKVGTPICIPQREFIDIGRIASIENNHKPVDTAKKGQKVAIKIVGSSPEEQQKMFGRHFELEDELVSHISRKSIDLLKLNYRDDLSIEEWRLVVKLKTLFKIQ | 1375 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 8630351 | 8637627 | + | Bda005632.1 | Bda11g00879 | 15987 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda11g00879 | 1375 | Pfam | Elongation factor Tu domain 2 | 1022 | 1097 | IPR004161 | GO:0005525 | |
Bda11g00879 | 1375 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 782 | 1074 | IPR027417 | - | |
Bda11g00879 | 1375 | MobiDBLite | consensus disorder prediction | 1 | 254 | - | - | |
Bda11g00879 | 1375 | MobiDBLite | consensus disorder prediction | 472 | 568 | - | - | |
Bda11g00879 | 1375 | CDD | aeIF5B_II | 1007 | 1117 | - | - | |
Bda11g00879 | 1375 | Gene3D | Translation factors | 1238 | 1375 | - | - | |
Bda11g00879 | 1375 | PRINTS | GTP-binding elongation factor signature | 903 | 912 | IPR000795 | GO:0003924|GO:0005525 | |
Bda11g00879 | 1375 | PRINTS | GTP-binding elongation factor signature | 851 | 861 | IPR000795 | GO:0003924|GO:0005525 | |
Bda11g00879 | 1375 | PRINTS | GTP-binding elongation factor signature | 787 | 800 | IPR000795 | GO:0003924|GO:0005525 | |
Bda11g00879 | 1375 | PRINTS | GTP-binding elongation factor signature | 867 | 878 | IPR000795 | GO:0003924|GO:0005525 | |
Bda11g00879 | 1375 | Pfam | Elongation factor Tu GTP binding domain | 787 | 993 | IPR000795 | GO:0003924|GO:0005525 | |
Bda11g00879 | 1375 | CDD | IF2_aeIF5B_IV | 1246 | 1341 | - | - | |
Bda11g00879 | 1375 | MobiDBLite | consensus disorder prediction | 626 | 662 | - | - | |
Bda11g00879 | 1375 | MobiDBLite | consensus disorder prediction | 626 | 677 | - | - | |
Bda11g00879 | 1375 | SUPERFAMILY | Translation proteins | 1242 | 1374 | IPR009000 | - | |
Bda11g00879 | 1375 | MobiDBLite | consensus disorder prediction | 268 | 289 | - | - | |
Bda11g00879 | 1375 | Coils | Coil | 421 | 459 | - | - | |
Bda11g00879 | 1375 | Pfam | Translation-initiation factor 2 | 1112 | 1224 | IPR023115 | - | |
Bda11g00879 | 1375 | Gene3D | - | 777 | 1005 | IPR027417 | - | |
Bda11g00879 | 1375 | TIGRFAM | small_GTP: small GTP-binding protein domain | 788 | 912 | IPR005225 | GO:0005525 | |
Bda11g00879 | 1375 | PANTHER | TRANSLATION INITIATION FACTOR IF-2-RELATED | 1 | 1375 | IPR015760 | - | |
Bda11g00879 | 1375 | SUPERFAMILY | Initiation factor IF2/eIF5b, domain 3 | 1108 | 1237 | IPR036925 | - | |
Bda11g00879 | 1375 | Gene3D | Translation factors | 1006 | 1124 | - | - | |
Bda11g00879 | 1375 | MobiDBLite | consensus disorder prediction | 399 | 445 | - | - | |
Bda11g00879 | 1375 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 783 | 999 | IPR000795 | GO:0003924|GO:0005525 | |
Bda11g00879 | 1375 | CDD | IF2_eIF5B | 786 | 996 | - | - | |
Bda11g00879 | 1375 | MobiDBLite | consensus disorder prediction | 128 | 144 | - | - | |
Bda11g00879 | 1375 | Coils | Coil | 488 | 557 | - | - | |
Bda11g00879 | 1375 | PANTHER | PHOTOSYSTEM II PROTEIN D1 | 1 | 1375 | - | - | |
Bda11g00879 | 1375 | MobiDBLite | consensus disorder prediction | 353 | 376 | - | - | |
Bda11g00879 | 1375 | MobiDBLite | consensus disorder prediction | 417 | 436 | - | - | |
Bda11g00879 | 1375 | MobiDBLite | consensus disorder prediction | 181 | 198 | - | - | |
Bda11g00879 | 1375 | MobiDBLite | consensus disorder prediction | 221 | 238 | - | - | |
Bda11g00879 | 1375 | MobiDBLite | consensus disorder prediction | 663 | 677 | - | - | |
Bda11g00879 | 1375 | Gene3D | - | 1125 | 1231 | IPR036925 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda11g00879 | Bda-Chr11:8630351 | Bda13g00740 | Bda-Chr13:8913640 | 7.10E-31 | dispersed | |
Bda11g00879 | Bda-Chr11:8630351 | Bda03g00387 | Bda-Chr3:3205293 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda11g00879 | K03243 | - | csv:101204360 | 1653.26 |