Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00879 ATGGGTCGAAAGAAGCCGAATGCTCGGGAGGATGATGTGCCTGCACCAGCGACTGCTCAGGGAGGGGGTAAAGCAAAGAAGAAGGCGCTTTTAATAGACGACGACGAGTATTCCATTGGAACAGAAATATCTGAGGACTCGCAAGTTCAGGAGGAGACGGTTGCAACCACGGGGAAGAAGAAGGGTAGAAAGGGTAACTTAAAAGCTTCACAATCAAAAGACGAAGAAGAGGATGATGACTTTGTGCCGGAGATTGTTATCACTGGGAAAAAGAAGGGAAAATCAAAGAAGGGTGGTGGAAACAGCGTGTTTGGCGCATCAAGCTTTGGTTTGCTTGGGGAGGAAAACAATGTAGATGATGATGATGATGATGAACACTCTGTTTTATCTGGTGAGAAGGATAATGATGAAGAGGATGTTCCGGTTGTAAGCTTTTCAGGTAAGAAAAAAGGATCGAGGAATTCTAAGAAAAAAGATAATTTGTTTAAAGACTCGTCGGCATTTGATGCCATTGATGATGAGAATGATGGAGAAGTGAGTGATAGTGAGAGTAGGATTGACAAAGATGATGATGAGATTGTGCCAGTTATAACCGGAAGGAAGAAGCCATCCAAAGGTGGAAAGACAAGTAGGAGTACATTTCAAGCTTCAAATTTTGGTGGACTAGATGAGGACGATGATAAGGATGAAAAGAAAGATGTGGATGAAGATGTTGCTCCTATTAGTTTCTCTGGTTTGAAAAAGAAGTCTTCCAATGCAACAAAGAGGAGTGGTAATCTTTTTAGTTTGGCAGTTATCGACGATGCTGGTGATGAAGGTCCTTCTGTATCAGAATCAAGCAGAGCTGGTGATGATCTCGTTGAGGATGAAGATGCCTCAGTTATTGCATTTTCTGGCAAGAAAAAGTCCTCAAAGAAGAAAAGTAATAGTGTTTTTGCTTCATTGGATGACATGAGTGCACTTGAAAGTGGAGTTGGAATTGGAGTTGAACCTGATGTACTGAGTGGTGGATCTAGTTATGTTGATGCTGACACCTCTGTGACCATCACGAAAGAGGTTGCAGAGTCCTCAAAAAATAAGAAAAAGAAGAAAAAGAGTGGAAGGACTGCTCAAGAGGAAGATGATTTGGATAAAATTCTTGCAGAACTCGGTGAGGGACTGGCAGTACCAAAATCTGTTGTATCTGCTTCTCTTCCTCCAGAAGAGGTGAAATCTGATGTTCAACCTGAACCAGCTCTGCTTGTTGATGCGCCTGTGGAGAAGGAAGGTGAAGAAGAAAGTATGGAGTCGGCTGCAGCAAAGAAGAAGAAAAAGAAGAAGGAGAAGGAGAAGGAAAAGAAGGCTGCTGCAGCTGCTGTGGCAGCAGCTGCAGATGAGAAGGCTGAAATAACTGAAGAAGTAAAAATTGAGATGGCAGAGCCTAAAAAAGGCACTGCTAAGAGTAAAGTTCCTGAGAAGAAAGTACCAAAGCATGTTAGGGAAATGCAGGAGGCAATGGCGAGGAGAAAAGAAGAGGAAGAAAGGAAAAAGAGGGAAGAAGAAGAGAAGTTGAGGAAGGAAGAGGAGGAAAGGCTTAGGCAAGAGGAACTTGAGAGGCAAGCAGAAGAAGCAAAGAGAAGGAAAAAAGAAAAAGAAAAGGAGAAGCTTCAGAGGAAGAAGTTGGAAGGCAAGCTTTTGACGGGGAAGCAAAAGGAAGAACAGCGTAGGTTACAGGCAATGAAGAACCAATTTCTTGCAAACAGTGTGGGTTTGGCTCTTCCTGTTGCTGACTCTGGTGCACCAGTCAAACGACCCATTTACCAGACAAAGAAGACCAAAACAGCCCAACATCAAGCAAGTAGCGATGCATCTAAGGTAGTCGAGAACATAGAAGAAATTAAAAATCAGCCGGACCATGTGGCAGAGGTTGAATCTGTAGAGTTGAAAAAGATGGAAGATGTGGAAACAGTGAATGTGGATGAGAAATCTGAAATTTCTGAGCCTGTAGAAGATAATGGGATGGAAGAAGAAGATGACGACGAGGATGAATGGGATGCAAAGAGCTGGGATGATGCTGTCGTTGATCTTACTGTGAAAAGTGCATTTGCTCATGAAGAAGTTGACTCTGAAACAGAACTCGTGGTGAAAAAAGAGAAAAAGAGTGGCACATCAATTTTTGACCTTGCTGCTACAAATGTTGGCAGCACACCAGCTCTTTCTGTCAACCACAGTTTTTCTTCTAAGGATGTTGAAGTTAGCAAAAAGCAGTCTGAGGTGGAAGTTGTGGATAATAACAAAAGAAAAAATGCTGTTGTTAAGAAGGAAGCTCCAAGATTAGATACTGCGTCTAAAAATAGTGAAAGTAATCTCCGTTCTCCTATTTGCTGTATTATGGGTCACGTTGACACTGGTAAAACCAAGCTTCTGGATTGTATCCGAGGAACTAATGTTCAAGAAGGTGAGGCTGGAGGTATTACCCAACAAATTGGAGCGACTTATTTTCCTGCAGAAAACATACGTGAAAGAACTAGAGAATTGAAAGCAGATGCATCTTTGAAAGTTCCTGGTCTACTTGTTATTGATACCCCTGGACATGAATCTTTCACCAACCTACGATCCCGCGGTTCTGGTTTATGTGATATCGCAATTTTAGTTGTTGACATCATGCATGGTTTAGAGCCGCAAACAATAGAATCACTCAATTTATTGAAAATGAGGGACACAGAATTCATTGTTGCATTGAACAAGGTGGATAGACTGTATGGGTGGAAAACATGTCGAAATGCTCCAATTGTGAAGACAATGAAGCAACAATCAAAGGACGTGCAGAATGAGTTCAATATGAGGCTCACACAGATTATCACTCAATTCAAAGAACAAGGTTTAAATACTGAATTATACTATAAAAATAAAGAAATGGGGGAAACTTTCAGTATAGTACCAACAAGTGCTATAAGTGGGGAAGGTATTCCAGATTTGTTATTACTACTGGTCCAGTGGTCTCAGAAAACTATGGTTGAAAAGCTTACTTACAGTGATGAAGTGCAGTGTACGGTGTTGGAGGTTAAGGTGGTTGAAGGCCATGGGACAACCATCGATGTTGTATTAGTTAATGGCGTGCTTCATGAAGGAGACCAAATAGTTGTTTGCGGAATGCAGGGTCCAATTGTTACTTCAATTCGGGCGCTATTGACACCACATCCAATGAAGGAACTCCGAGTTAAGGGCACATATCTGCATCATAAGCAAATTAAGGCTGCCCAAGGCATTAAGATTACAGCACAGGGCCTTGAGCATGCTATTGCCGGAACTGGTCTTTATGTGGTAGGTCCTGGCGACGACTTGGAAGACATTAAAGAATCAGCCATGGAAGATATGAAGTCTGTCTTGAATAGGATTGACAAGAGTGGCGAAGGGGTTTGTGTGCAAGCATCTACACTGGGTTCGTTGGAGGCATTGCTGGAGTTTTTGAAGTCTCCTGCTGTTAACATTCCTGTCAGTGGAATAAGCATTGGTCCTGTACATAAAAAAGATGTTATGAAGGCCAGTGTGATGCTTGAAAAGAAGAAGGAATATGCCACTATCTTGGCTTTTGATGTCAAAGTGACACCAGAGGCCCGTGAGCTTTCCGAGGAACTGGGTGTGAAGATTTTTATGGCGGACATCATTTATCACTTGTTTGATCAGTTTAAGGCATACATTGACAATATTAAAGAGGAAAAGAAGAAGGAAGCTGCTGAGGAAGCAGTATTTCCATGTGTCCTTAAGATTCTACCAAATTGTATTTTCAATAAGAAGGATCCAATCGTCTTGGGAGTGGATGTACTTGAAGGCATTGCCAAGGTTGGAACTCCTATTTGTATACCTCAAAGAGAGTTTATTGATATTGGCCGCATCGCATCTATTGAAAACAACCATAAACCTGTTGATACAGCAAAGAAAGGACAGAAAGTAGCCATTAAGATAGTTGGCTCTTCCCCAGAGGAGCAGCAAAAGATGTTTGGTAGGCATTTTGAGCTCGAAGATGAACTTGTTAGTCATATCTCAAGGAAATCAATAGATCTGCTCAAACTCAATTATCGGGATGATTTGTCCATCGAGGAGTGGAGGCTGGTGGTGAAATTGAAGACTCTTTTCAAGATACAATGA 4128 41.86 MGRKKPNAREDDVPAPATAQGGGKAKKKALLIDDDEYSIGTEISEDSQVQEETVATTGKKKGRKGNLKASQSKDEEEDDDFVPEIVITGKKKGKSKKGGGNSVFGASSFGLLGEENNVDDDDDDEHSVLSGEKDNDEEDVPVVSFSGKKKGSRNSKKKDNLFKDSSAFDAIDDENDGEVSDSESRIDKDDDEIVPVITGRKKPSKGGKTSRSTFQASNFGGLDEDDDKDEKKDVDEDVAPISFSGLKKKSSNATKRSGNLFSLAVIDDAGDEGPSVSESSRAGDDLVEDEDASVIAFSGKKKSSKKKSNSVFASLDDMSALESGVGIGVEPDVLSGGSSYVDADTSVTITKEVAESSKNKKKKKKSGRTAQEEDDLDKILAELGEGLAVPKSVVSASLPPEEVKSDVQPEPALLVDAPVEKEGEEESMESAAAKKKKKKKEKEKEKKAAAAAVAAAADEKAEITEEVKIEMAEPKKGTAKSKVPEKKVPKHVREMQEAMARRKEEEERKKREEEEKLRKEEEERLRQEELERQAEEAKRRKKEKEKEKLQRKKLEGKLLTGKQKEEQRRLQAMKNQFLANSVGLALPVADSGAPVKRPIYQTKKTKTAQHQASSDASKVVENIEEIKNQPDHVAEVESVELKKMEDVETVNVDEKSEISEPVEDNGMEEEDDDEDEWDAKSWDDAVVDLTVKSAFAHEEVDSETELVVKKEKKSGTSIFDLAATNVGSTPALSVNHSFSSKDVEVSKKQSEVEVVDNNKRKNAVVKKEAPRLDTASKNSESNLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADASLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRDTEFIVALNKVDRLYGWKTCRNAPIVKTMKQQSKDVQNEFNMRLTQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAISGEGIPDLLLLLVQWSQKTMVEKLTYSDEVQCTVLEVKVVEGHGTTIDVVLVNGVLHEGDQIVVCGMQGPIVTSIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPGDDLEDIKESAMEDMKSVLNRIDKSGEGVCVQASTLGSLEALLEFLKSPAVNIPVSGISIGPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEARELSEELGVKIFMADIIYHLFDQFKAYIDNIKEEKKKEAAEEAVFPCVLKILPNCIFNKKDPIVLGVDVLEGIAKVGTPICIPQREFIDIGRIASIENNHKPVDTAKKGQKVAIKIVGSSPEEQQKMFGRHFELEDELVSHISRKSIDLLKLNYRDDLSIEEWRLVVKLKTLFKIQ 1375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8630351 8637627 + Bda005632.1 Bda11g00879 15987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00879 1375 Pfam Elongation factor Tu domain 2 1022 1097 IPR004161 GO:0005525
Bda11g00879 1375 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 782 1074 IPR027417 -
Bda11g00879 1375 MobiDBLite consensus disorder prediction 1 254 - -
Bda11g00879 1375 MobiDBLite consensus disorder prediction 472 568 - -
Bda11g00879 1375 CDD aeIF5B_II 1007 1117 - -
Bda11g00879 1375 Gene3D Translation factors 1238 1375 - -
Bda11g00879 1375 PRINTS GTP-binding elongation factor signature 903 912 IPR000795 GO:0003924|GO:0005525
Bda11g00879 1375 PRINTS GTP-binding elongation factor signature 851 861 IPR000795 GO:0003924|GO:0005525
Bda11g00879 1375 PRINTS GTP-binding elongation factor signature 787 800 IPR000795 GO:0003924|GO:0005525
Bda11g00879 1375 PRINTS GTP-binding elongation factor signature 867 878 IPR000795 GO:0003924|GO:0005525
Bda11g00879 1375 Pfam Elongation factor Tu GTP binding domain 787 993 IPR000795 GO:0003924|GO:0005525
Bda11g00879 1375 CDD IF2_aeIF5B_IV 1246 1341 - -
Bda11g00879 1375 MobiDBLite consensus disorder prediction 626 662 - -
Bda11g00879 1375 MobiDBLite consensus disorder prediction 626 677 - -
Bda11g00879 1375 SUPERFAMILY Translation proteins 1242 1374 IPR009000 -
Bda11g00879 1375 MobiDBLite consensus disorder prediction 268 289 - -
Bda11g00879 1375 Coils Coil 421 459 - -
Bda11g00879 1375 Pfam Translation-initiation factor 2 1112 1224 IPR023115 -
Bda11g00879 1375 Gene3D - 777 1005 IPR027417 -
Bda11g00879 1375 TIGRFAM small_GTP: small GTP-binding protein domain 788 912 IPR005225 GO:0005525
Bda11g00879 1375 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 1 1375 IPR015760 -
Bda11g00879 1375 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1108 1237 IPR036925 -
Bda11g00879 1375 Gene3D Translation factors 1006 1124 - -
Bda11g00879 1375 MobiDBLite consensus disorder prediction 399 445 - -
Bda11g00879 1375 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 783 999 IPR000795 GO:0003924|GO:0005525
Bda11g00879 1375 CDD IF2_eIF5B 786 996 - -
Bda11g00879 1375 MobiDBLite consensus disorder prediction 128 144 - -
Bda11g00879 1375 Coils Coil 488 557 - -
Bda11g00879 1375 PANTHER PHOTOSYSTEM II PROTEIN D1 1 1375 - -
Bda11g00879 1375 MobiDBLite consensus disorder prediction 353 376 - -
Bda11g00879 1375 MobiDBLite consensus disorder prediction 417 436 - -
Bda11g00879 1375 MobiDBLite consensus disorder prediction 181 198 - -
Bda11g00879 1375 MobiDBLite consensus disorder prediction 221 238 - -
Bda11g00879 1375 MobiDBLite consensus disorder prediction 663 677 - -
Bda11g00879 1375 Gene3D - 1125 1231 IPR036925 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00879 Bda-Chr11:8630351 Bda13g00740 Bda-Chr13:8913640 7.10E-31 dispersed
Bda11g00879 Bda-Chr11:8630351 Bda03g00387 Bda-Chr3:3205293 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00879 K03243 - csv:101204360 1653.26