Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00908 ATGGGCCTCAAGGCCCATCTGTTCGAGCCCACACAGAATACTATCTCAAATTTCCGACGTGTAGCGGTGGGGTGGTCCACGCCGGAGTCTTCTGACAAAATGAACGGGAGCAGAGGGGAGAGTGGAGAAGAAGAGACGAGATTGCTGTGGAGGCTTCCGGTTTTGAAATCAAAACAACTGGGAAAGGTTGGCCCCGCTTTTGGCATTGGAGTTGGTTGTGGTTTCGGCTTTGGAGTTGGCCTAATTGGAGGTGTGGGCTTCGGTCCTGGAATTCATGGCCTGCAATTCGGATTTGGATTTGGTGCTGGGTGTGGCATTGGATTAGGGTTTGGCTATGGCGTTGGGAGGGGAATTGCTCAGGATCAGAGCAGAAGATACTCCAATGTAGGGAATCTTAGCCACCAGAACATTCCTTCTCAGGATGACATTGTTGCCATTGTTGATGAGCTTGTTCTTAACAGTAAGAAGCTTATCAGAGCTACTTCAAAAGAGATCGACAAGTGGAGAAGATGA 513 49.32 MGLKAHLFEPTQNTISNFRRVAVGWSTPESSDKMNGSRGESGEEETRLLWRLPVLKSKQLGKVGPAFGIGVGCGFGFGVGLIGGVGFGPGIHGLQFGFGFGAGCGIGLGFGYGVGRGIAQDQSRRYSNVGNLSHQNIPSQDDIVAIVDELVLNSKKLIRATSKEIDKWRR 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8903359 8905907 + Bda005662.1 Bda11g00908 16016

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00908 170 PANTHER GLYCINE-RICH PROTEIN 34 170 - -
Bda11g00908 170 PANTHER GLYCINE-RICH PROTEIN 34 170 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00908 - - - csin:114286949 129.413
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1778 Blo01g01696 . . . Bpe02g00246 . . Bma01g02462 . . . . . . . . . . . . . . . . Cla08g00196 . Cec08g0041 Cco08g0266 . Cmu08g0182 Cre08g0171 . . . . . . . Cme09g00133 . . Bda11g00908 . . . . . . . Cmo09g01191 . . . . . . Bhi06g00097 Tan10g1822 . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010253 1 2 1 2 1 1 2 1 1 1 1 1 0 1 1 1 1 0 0 1 1 1 1 1 1 0 1 2 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00908 Bda_Chr11 FPKM 22.970007 22.911798 27.785587 27.328127 21.985708 20.916559 24.963636 37.457497 42.130821