Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00911 ATGGGAGAAGCAAGAGATATCGTGATTGTAGGTGGAGGTATATGCGGCCTTGCCACTGCGCTTGCTCTGCACAGGAAGGGAATCAGCAGCACTGTGCTGGAAAAATCACCGACACTCCGAGCCGCCGGAGCTGCTATCACTGTACAATCAAACGGGTGGCGCGCTCTCGATCAACTTGGCGTTGCTTCCAAGCTCAGACAGACTTCCATCCCCATAACAAGTGCTTGTCGTCATATACTGGAAAGTGGGAAGCGACTGGATCTTCCTGTTGGAAAAGAAGTACGATGCTTGAGACGAGCTGATCTTCTTAAAGCTCTGGCGGACGATCTACCTCCCGAAACCTTATGCCTGGGCTGTCATGTGATTTCAATCAGAATGGATTCTATAACTAGTCATCCCGTGCTAGAACTAAACACTGGAAAGGTTCTTACGCCTAAGGTGGTGATTGGATGTGATGGCATAAACTCTGTGGTTTCGCGCTTGGTTGGTTTGACATCTACGAAGCTCTTTTCTACGGTTGCGCTGAGGGGATTGACTTACTATGAAGATGGGCATGGTTTTGATAGTGAGTTTGTCGTCTTTAATGGTAAAGATCGAGTTCGATTGGGACAGATACCTATCAATCGCAACCAAGTCTATTGGTTCATCAATCGAGAACGCTCATCATTAGACACAGTGGCGGCTGAGGATCAAGAGCTTATATGGGAATCAGCCATGGAGTTGACGAAAGACTTCCCCCAGAAAATTCGAGAGATGGTGGAGGAAAGTGATAAAAAATTATTACATCTTACAGAGTTGAGATGCAGACTGCCCTGGGAGCTGCTGCAAAAGAAGCTTAGGAGAGGGACGGTGACTGTGGCCGGAGATGCCATGCATGCGATGGGCCCCTTCCTGGGTCAGGGCGGCTCGGCCTCCCTCGAAGACGCCGTCGTTCTGGGCCGCTGCTTGGGTCAAAAGCTGAACAGTCGCAGCATTTTGACGGAGACGGAAGCAAAGAGGAAGGTAGAAGAAGCTTTTGATGAGTATGAAAAGGAGAGAAAGATGAGAATGGTGTGGCTAATTCTAGAAAACTATTTGCATGGTTCACTCCTTGAAACTTCGTCGAAAGTGGTCAAGTTTTTTATTCTTGCTTTTATGGCCATTTTTTATAGGGTTTATAACAACCATTCAAACTACGACTGCGGGAGTCTTTAA 1194 47.49 MGEARDIVIVGGGICGLATALALHRKGISSTVLEKSPTLRAAGAAITVQSNGWRALDQLGVASKLRQTSIPITSACRHILESGKRLDLPVGKEVRCLRRADLLKALADDLPPETLCLGCHVISIRMDSITSHPVLELNTGKVLTPKVVIGCDGINSVVSRLVGLTSTKLFSTVALRGLTYYEDGHGFDSEFVVFNGKDRVRLGQIPINRNQVYWFINRERSSLDTVAAEDQELIWESAMELTKDFPQKIREMVEESDKKLLHLTELRCRLPWELLQKKLRRGTVTVAGDAMHAMGPFLGQGGSASLEDAVVLGRCLGQKLNSRSILTETEAKRKVEEAFDEYEKERKMRMVWLILENYLHGSLLETSSKVVKFFILAFMAIFYRVYNNHSNYDCGSL 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8930645 8932531 + Bda005666.1 Bda11g00911 16019

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00911 397 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 - -
Bda11g00911 397 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 144 159 - -
Bda11g00911 397 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 281 296 - -
Bda11g00911 397 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 296 312 - -
Bda11g00911 397 PANTHER FAD/NAD(P)-BINDING OXIDOREDUCTASE FAMILY PROTEIN 3 396 IPR044560 -
Bda11g00911 397 Pfam FAD binding domain 6 334 IPR002938 GO:0071949
Bda11g00911 397 PANTHER FAD/NAD(P)-BINDING OXIDOREDUCTASE FAMILY PROTEIN 3 396 - -
Bda11g00911 397 Coils Coil 325 345 - -
Bda11g00911 397 SUPERFAMILY FAD/NAD(P)-binding domain 6 385 IPR036188 -
Bda11g00911 397 Gene3D - 6 374 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00911 - - - hbr:110633347 401.364
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00911 Bda-Chr11:8930645 Bda14g00623 Bda-Chr14:4675049 1.06E-79 dispersed
Bda11g00910 Bda-Chr11:8913157 Bda11g00911 Bda-Chr11:8930645 5.85E-65 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g179 . . . . . . . Bma01g02703 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00911 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001099 3 2 7 1 2 3 4 2 2 3 2 2 0 4 2 3 2 5 2 2 2 2 1 2 2 1 2 4 2 7 78
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00911 Bda_Chr11 FPKM 7.136038 5.132325 6.979057 6.785406 10.610669 9.454968 9.742666 5.209202 5.298032