Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00915 ATGTGGGTCTTCGTTTCTGTTCTTCGTCAGAAACCACGGTTGGCGGCGGCTGCCGCTGTGTTGCTTATGGTGCTGCCGTGCTCGTCTTGGTTGGCTTCTGCATCGCCGCAGGTCCCGGCGATGTTCGTGTTTGGAGACTCATTGGTCGAAGTTGGTAACAACAATTATCTCAGGTCAATTGCCAGATCTAACTACGCTCCATATGGCTGCGATTTCAGCGGTGGTCCGACTGGAAGATTTTCTAATGGAAAAACATTGGTCGACATGTTTGCTGACCTGCTCGGAGTTCCTTATCCGCCGCCGTTTAAAGACCCCAATGCAGTAGGACGCAGAATACTCAACGGGGTTAATTATGCTTCTGCTGCTGCAGGCATTCTTGATGAAACTGGCCAACATTACGGAGAAAGACACAGTCTGAGCCAGCAAGTGGTTAATTTCGAAACGACGCTGAATCAGCTAAGGGGGATGATGAGTGCAGGAAACCTGACCCAGTACCTTGCCAAATCCATCGTCGTTTTAGTGTTTGGAAGCAACGACTACATCAACAACTATCTCCTCCCTTCCCTTTACACTTCCAGCCTCACATACACTCCTCCTCAGTTCGCCAACCTTCTTCTCAACCACTATGCCCGTCAACTTCTGGCATTGAACAGCGTAGGATTAAGGAAATTTATGGTGGCCGGAGTGGGACCATTGGGTTGCATTCCGAATCAGAGGGCCACCGGCGTAGCTCCCGCGGGAAGGTGCTTGGATTCGGTGAATGAAATCCTTGGAACTGTGAACCAAGGTCTCCGATCGCTCATAGACCAGCTAAACTCCAACCACCCGGGAGCCATCTTCGTTTACGCCAACACCTACGGCGCCGTCGGCGACATCCTGAACAACCCGGCCACCTACGGGTTCAGCACGGTGGATAAGGGATGCTGCGGAATAGGGAGAAACAGAGGACAAATAACGTGTCTTCCCTACGAACTTCCATGCTCCGACCGGACTAGATATGTATTTTGGGACGCCTTTCATCCAACCGAAGCTGCCACCGCTGTTCTTGCATGGAGGGCATTTAAGGGCCCACCTTCTGACATTCATCCAATCAATCTCCAACAAATGTCTTTCCTTTGA 1119 51.12 MWVFVSVLRQKPRLAAAAAVLLMVLPCSSWLASASPQVPAMFVFGDSLVEVGNNNYLRSIARSNYAPYGCDFSGGPTGRFSNGKTLVDMFADLLGVPYPPPFKDPNAVGRRILNGVNYASAAAGILDETGQHYGERHSLSQQVVNFETTLNQLRGMMSAGNLTQYLAKSIVVLVFGSNDYINNYLLPSLYTSSLTYTPPQFANLLLNHYARQLLALNSVGLRKFMVAGVGPLGCIPNQRATGVAPAGRCLDSVNEILGTVNQGLRSLIDQLNSNHPGAIFVYANTYGAVGDILNNPATYGFSTVDKGCCGIGRNRGQITCLPYELPCSDRTRYVFWDAFHPTEAATAVLAWRAFKGPPSDIHPINLQQMSFL 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8956790 8961314 + Bda005670.1 Bda11g00915 16023

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00915 372 Gene3D SGNH hydrolase 29 356 IPR036514 -
Bda11g00915 372 Pfam GDSL-like Lipase/Acylhydrolase 42 350 IPR001087 GO:0016788
Bda11g00915 372 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 19 370 - -
Bda11g00915 372 CDD SGNH_plant_lipase_like 39 357 IPR035669 -
Bda11g00915 372 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 19 370 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00915 - - - nnu:104594025 526.554
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g00365 Bda11g00915 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00915 Bda-Chr11:8956790 Bda11g00935 Bda-Chr11:9129505 9.19E-119 dispersed
Bda12g00918 Bda-Chr12:40206773 Bda11g00915 Bda-Chr11:8956790 9.89E-67 dispersed
Bda15g00606 Bda-Chr15:9252428 Bda11g00915 Bda-Chr11:8956790 2.89E-49 dispersed
Bda04g00412 Bda-Chr4:51668425 Bda11g00915 Bda-Chr11:8956790 2.72E-137 transposed
Bda05g00620 Bda-Chr5:54255408 Bda11g00915 Bda-Chr11:8956790 1.01E-50 transposed
Bda11g00915 Bda-Chr11:8956790 Bda03g00365 Bda-Chr3:3075315 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g21 . . . Bda11g00915 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1760 Blo01g01690 Blo12g00809 . Bda03g00365 Bpe02g00252 . Bma04g00342 Bma01g02456 . . . Cma09g01244 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00915 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006909 2 0 2 2 1 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00915 Bda_Chr11 FPKM 5.339444 6.457998 3.893288 4.769207 6.998808 6.16201 6.759839 6.022417 5.18506