Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00916 AAGAGAATGACTCCATCTAATTTGGCGGCGCAGTTTGGCGATACGACTCACACCAAGGTTTTCGTTGGGGGGTTGGCATGGGAAACCCAGAATGAAACGATGAAGAAGTACTTTGAACAGTTTGGTGACATCTTGGAGGCCGTTGTTATTACTGATAAACCCACCGGAAGATCCAAGGGCTATGGATTTGTAACGTTCCGAGACCCGGAAGCCGCCATGAGAGCTTGTGTGGATGCTGCTCCTGTGATAGACGGAAGGAGGGCCAACTGCAATCTGGCTTCTTTGGGTGTTCAGAGATCCAAGCCTTCAACGCCAAAACATGGTGGAGGAGGCAGGAGCTTTAGGGTAATGGGCTCTTTTCAGACAGGGTTTGGAGGGAGGGCTGGAGCAGCTTTTCCTTCACCTGCAACCTTCCCCCATTATGCCTCTCAACAAGGGATACCTTATAATCTTTATGGGTATTCTTCGTACTCGCCAGATTACACTTATCTTACGAGCTATTACAATGTCTATGGAGGTGCAACCACTCAATATCCAGTGTACGGGGCAGGGGTCGGGGGGATGATGACAACCGGAGCAGCAGCGGCAGCCGCTTCCTTTTTCCCTTTTCTTCAATTTGGAGAGGGAAGTGGTGGGGCTAATGGCTACTCTTCTGGTCAAGGCTATGGCTTCCAATATCCTCACCATCTCTTTCAATATTCACCTATTACTTCAAATGCTACCACTTACCCTCATCACTATGCTCCATCCATGTCTCTCGCTCCTACTCCTGCTGTGCCATCAGGTTTCTTTTCTTTTCTTCTCCTACTTTACAATCTTGAAGTGATATTTAGTTCTTGTTTGGCGCAAAGTTTATTTGCTTCTAATTACAATCTATTCATCTAA 885 47.12 KRMTPSNLAAQFGDTTHTKVFVGGLAWETQNETMKKYFEQFGDILEAVVITDKPTGRSKGYGFVTFRDPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGGRSFRVMGSFQTGFGGRAGAAFPSPATFPHYASQQGIPYNLYGYSSYSPDYTYLTSYYNVYGGATTQYPVYGAGVGGMMTTGAAAAAASFFPFLQFGEGSGGANGYSSGQGYGFQYPHHLFQYSPITSNATTYPHHYAPSMSLAPTPAVPSGFFSFLLLLYNLEVIFSSCLAQSLFASNYNLFI 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8965331 8975726 + Bda005671.1 Bda11g00916 16024

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00916 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 102 IPR000504 GO:0003723
Bda11g00916 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 75 IPR000504 GO:0003723
Bda11g00916 294 PANTHER OS01G0876800 PROTEIN 3 262 - -
Bda11g00916 294 PANTHER BOULE-RELATED 3 262 IPR037366 GO:0003729
Bda11g00916 294 SUPERFAMILY RNA-binding domain, RBD 8 113 IPR035979 GO:0003676
Bda11g00916 294 SMART rrm1_1 19 91 IPR000504 GO:0003723
Bda11g00916 294 Gene3D - 6 131 IPR012677 -
Bda11g00916 294 CDD RRM_RBM24_RBM38_like 18 93 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00916 - - - qlo:115959518 414.461
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01575 Bda-Chr1:51584906 Bda11g00916 Bda-Chr11:8965331 5.51E-51 dispersed
Bda03g00488 Bda-Chr3:4181325 Bda11g00916 Bda-Chr11:8965331 1.34E-54 dispersed
Bda03g01023 Bda-Chr3:9639766 Bda11g00916 Bda-Chr11:8965331 7.62E-51 dispersed
Bda08g00084 Bda-Chr8:767339 Bda11g00916 Bda-Chr11:8965331 1.37E-50 dispersed
Bda11g00769 Bda-Chr11:7751990 Bda11g00916 Bda-Chr11:8965331 1.14E-53 dispersed
Bda11g00916 Bda-Chr11:8965331 Bda07g00304 Bda-Chr7:4134627 3.09E-11 dispersed
Bda14g00337 Bda-Chr14:2409238 Bda11g00916 Bda-Chr11:8965331 3.31E-50 transposed
Bda11g00916 Bda-Chr11:8965331 Bda03g00364 Bda-Chr3:3055279 1.60E-100 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1758 Blo01g01688 Blo12g00810 . . Bpe02g00254 Bpe04g00327 . Bma01g02455 . . . . . . . Cpe06g00946 . . . . . . . . Cla08g00181 . Cec08g0069 Cco08g0251 . Cmu08g0171 Cre08g0160 . . . . . . . . . . Bda11g00916 . . . . . Sed08g1872 . Cmo09g01205 . . . Car09g01075 . Cpe02g00981 Bhi06g00110 Tan10g1835 Cmetu11g0599 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005770 1 3 1 1 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00916 Bda_Chr11 FPKM 3.969865 4.905485 9.159162 7.971233 12.810391 13.375047 13.038133 4.437126 4.402664