Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00922 ATGGATTCTATGGACGCGATCGAGGAGCTAGCACAGCTCTCTGAGTCTATGCGGCAAGCAGCTGCTTTGCTTGCCGACGAAGATGTTGATGAGAATTCCAGTTCTGCTGGTTCCTCCCGTAGGTCTTCCACTTTCCTCAACGTTGTCGCTCTCGGAAATGTTGGAGCTGGTAAATCTGCAGTTTTGAATAGTTTGATTGGACACCCTGTTTTGCCAACTGGTGAAAATGGTGCTACCCGTGCTCCCATAAGCATTGATTTACAGAGGGATGGTTCCTTGAGTAGTAAATCTATTATTTTGCAGATCGACAATAAATCGCAACAAGTTTCAGCAAGTGCCTTACGGCATTCTTTACAGGATAGACTGAGTAAAGGTTCTTCTGGGAAGAGCCGAGATGAAATATATTTAAAGCTCCGCACGAATACAGATGGTGTGCATGATTATTGTTATTTGGCAATTGGGTTTTTTTTTTTCTATTTCTTATTTCATGTTGTCAGTGACTATGCTGAACATAATGATGCCATTTTACTAGTTATAGTACCTGCAGCTCAAGCTCCTGAGATTGCTTCATCTCGAGCTCTTAAGGTCGCAAAGGAATATGATGCAGAAGGTACACGAACAATTGGTATAATCAGCAAAATAGATCAGGCTGCTTCGGATCAGAAATCCCTTGCTGCAGTCCAGGCTATCCTTTTAAATAAAGGGCCATCACGCACATCAGACATCCCATGGGTTGCTTTGATTGGTCAGTCAGTTTCAATTGCTTCTGCACAGTCTGGATCTGTAAACTCTGAAAGTTCCTTAGAAACTGCGTGGAGGGCTGAGACAGAGAGTCTCAAATCCATACTAACTGGAGCACCACAAAATAAGTTAGGGAGAATCGCATTGGTGGATGCCCTGGCCCAACAGATACGCAATCGTATGAAAATCCGTGTTCCAAACCTTCTCTCTGGATTGCAAGGGAAGTCTCAAATAGTTAAAGATGAGTTGGTAAGACTTGGCGAACAAATGGTCCATGGTTCTGAGGGGACTAGGGCTTTAGCTTTGGAACTTTGCCGTGAATTCGAGGATAAGTTTCTCCAGCACATTGCGACCGGTGAGGGGGCTGGTTGGAAAATTGTTGCTAGCTTTGAGGGAAATTTTCCCAATAGAATAAAGCAGCTGCCTTTGGATAGACACTTTGATATGAACAATGTGAAACGGATTGTGCTAGAAGCTGATGGTTATCAGCCATATCTTATATCACCTGAAAAGGGTTTGAGATCCTTAATAAAAGGTGTTTTGGAGCTTGCTAAAGAACCATCACGTCTTTGTGTTGATGAGGTGCACCGCGTTCTGGTAGATATAGTGGCTGCTTCTGCAAATTCTACACCAGGTCTTGGAAGATACCCTCCTTTTAAAAGAGAGGTTGTGGCCATTGCAAGTGCCGCGTTAGACAGTTTTAAAACTGAAGCAAAGAAGATGGTGGTTGCCTTAGTGGATATGGAGCGAGCTTTTGTGCCCCCACAACACTTTATCCGATTGGTACAAAGGAGAATGGAGAGACAACGACGAGAGGAGGAGATTAAAACCCGATCTACAAAAAAAGGCCAGGATGCCGAACAGGGGATATCAAAACGAGCAAGTAGTCCACAAACTGATGGTCAACAAACTGGTGGAAGCTTGAAATCAATGAAAGATAAATCTGGAAAGGAAGATAAGGAAGTGCAAGAAAGTTCTGGTTTGAAGACTGCAGGTCCTGAAGGGGAAATAACAGCAGGCTATCTATTGAAGAAAAGTGCAAAAACAAATGGTTGGAGCCGTCGTTGGTTTGTTTTGAATGAGAAGACTGGAAAGCTTGGTTACACCAAAAAAGAAGAGGAGCGACATTTTCGTGGTGTCATCACCCTAGAGGAATGTTTGATAGAGGAGGGATTAGATGAAGAGGAGCCGCCTCCTTCTTCAAAGAGTTCAAAGGATAAAAAGGCCAATGCTAATGGACCCTCTGGAAAAACACCCAGTCTTGTCTTTAAGATTACCAGCAAAGTTCCTTATAAAACTGTTTTAAAAGCGCACAGTGCTGTTGTCTTGAAGGCTGAGAGCATGACCGATAAGGTTGAATGGATAAATAAGATACGCAATGTGATTCAACCCTCTAAAGGAGGACAAATGAGAGGTGCATCCTCTGAAGTTGGTCTTTCCATGCGACAAAGTTTTTCTGACGGTTCTTTGGATACGATGGTCAGAAGACCTGCAGACCCCGAAGAAGAACTCCGATGGATGTCTCAAGAAGTGCGGGGTTATGTTGAAGCAGTTTTGAGCAGTTTGGCTGCTAATGTCCCTAAAGCAGTTGTTCTCTGCCAAGTTGAGAAAGCCAAGGAAGATATGCTTAATCAGTTATACAGCTCAATCAGTGCCCAGAGCACTACAAGGATTGAAGAGCTACTTCAGGAGGACGCAAATGCAAGGCGTAGGAGAGAGAAATTCCAAAAACAGTCTTCTCTCCTCTCTAAATTAACACGTCAACTTAGCCTTCACGACAACCGTGCTGCTGCTGCTGCATCCAACTGGTCCGAAGGCATATTGGATTTTTTTGCAGAAAGCAGTCCAAGAACCAGCGCCGGTCCACCTGGTGAAGATTGGAGATCTGCATTTGATGCAGCTGCCAATGGTCCGACAGACTACCAGAGAACCTCATCAAATGGTCACAGTCGACATTACAGCGATCCAGCACAAAATGGTGAGGTTAACTCCGGTGCAAATTCTGGCAGCCGCCGGACTCCAAACAGATTGCCGCCGGCTCCACCACAGTCCACATCTGGCTCCAAATATGTTTAG 2817 44.44 MDSMDAIEELAQLSESMRQAAALLADEDVDENSSSAGSSRRSSTFLNVVALGNVGAGKSAVLNSLIGHPVLPTGENGATRAPISIDLQRDGSLSSKSIILQIDNKSQQVSASALRHSLQDRLSKGSSGKSRDEIYLKLRTNTDGVHDYCYLAIGFFFFYFLFHVVSDYAEHNDAILLVIVPAAQAPEIASSRALKVAKEYDAEGTRTIGIISKIDQAASDQKSLAAVQAILLNKGPSRTSDIPWVALIGQSVSIASAQSGSVNSESSLETAWRAETESLKSILTGAPQNKLGRIALVDALAQQIRNRMKIRVPNLLSGLQGKSQIVKDELVRLGEQMVHGSEGTRALALELCREFEDKFLQHIATGEGAGWKIVASFEGNFPNRIKQLPLDRHFDMNNVKRIVLEADGYQPYLISPEKGLRSLIKGVLELAKEPSRLCVDEVHRVLVDIVAASANSTPGLGRYPPFKREVVAIASAALDSFKTEAKKMVVALVDMERAFVPPQHFIRLVQRRMERQRREEEIKTRSTKKGQDAEQGISKRASSPQTDGQQTGGSLKSMKDKSGKEDKEVQESSGLKTAGPEGEITAGYLLKKSAKTNGWSRRWFVLNEKTGKLGYTKKEEERHFRGVITLEECLIEEGLDEEEPPPSSKSSKDKKANANGPSGKTPSLVFKITSKVPYKTVLKAHSAVVLKAESMTDKVEWINKIRNVIQPSKGGQMRGASSEVGLSMRQSFSDGSLDTMVRRPADPEEELRWMSQEVRGYVEAVLSSLAANVPKAVVLCQVEKAKEDMLNQLYSSISAQSTTRIEELLQEDANARRRREKFQKQSSLLSKLTRQLSLHDNRAAAAASNWSEGILDFFAESSPRTSAGPPGEDWRSAFDAAANGPTDYQRTSSNGHSRHYSDPAQNGEVNSGANSGSRRTPNRLPPAPPQSTSGSKYV 938
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9022379 9033494 + Bda005677.1 Bda11g00922 16030

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00922 938 MobiDBLite consensus disorder prediction 885 921 - -
Bda11g00922 938 MobiDBLite consensus disorder prediction 511 535 - -
Bda11g00922 938 SMART dynamin_3 14 245 IPR001401 GO:0003924|GO:0005525
Bda11g00922 938 Pfam PH domain 587 709 IPR001849 -
Bda11g00922 938 Pfam Dynamin family 48 213 IPR045063 -
Bda11g00922 938 SUPERFAMILY PH domain-like 583 710 - -
Bda11g00922 938 MobiDBLite consensus disorder prediction 651 666 - -
Bda11g00922 938 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 322 IPR027417 -
Bda11g00922 938 MobiDBLite consensus disorder prediction 558 572 - -
Bda11g00922 938 SMART PH_update 583 712 IPR001849 -
Bda11g00922 938 Gene3D - 162 328 IPR027417 -
Bda11g00922 938 MobiDBLite consensus disorder prediction 511 581 - -
Bda11g00922 938 Gene3D - 570 713 IPR011993 -
Bda11g00922 938 ProSiteProfiles GED domain profile. 751 844 IPR020850 -
Bda11g00922 938 ProSiteProfiles PH domain profile. 582 710 IPR001849 -
Bda11g00922 938 Coils Coil 805 825 - -
Bda11g00922 938 PRINTS Dynamin signature 202 218 IPR022812 -
Bda11g00922 938 PRINTS Dynamin signature 70 87 IPR022812 -
Bda11g00922 938 PRINTS Dynamin signature 183 201 IPR022812 -
Bda11g00922 938 PRINTS Dynamin signature 45 63 IPR022812 -
Bda11g00922 938 Gene3D - 7 146 IPR027417 -
Bda11g00922 938 Pfam Dynamin central region 262 504 IPR000375 -
Bda11g00922 938 PANTHER DYNAMIN 5 862 IPR022812 -
Bda11g00922 938 Gene3D Dynamin, middle domain 341 543 - -
Bda11g00922 938 PANTHER DYNAMIN-2A 5 862 - -
Bda11g00922 938 Pfam Dynamin GTPase effector domain 749 831 IPR003130 GO:0003924|GO:0005525
Bda11g00922 938 MobiDBLite consensus disorder prediction 536 557 - -
Bda11g00922 938 MobiDBLite consensus disorder prediction 636 666 - -
Bda11g00922 938 MobiDBLite consensus disorder prediction 861 938 - -
Bda11g00922 938 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 42 313 IPR030381 GO:0005525
Bda11g00922 938 SMART GED_2 746 839 IPR003130 GO:0003924|GO:0005525
Bda11g00922 938 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 71 80 IPR019762 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00922 K01528 DNM1_3; dynamin 1/3 [EC:3.6.5.5] - csv:101220753 1463.36
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g00360 Bda11g00922 CCT
Bda03g00360 Bda11g00922 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00309 Bda-Chr11:3426578 Bda11g00922 Bda-Chr11:9022379 1.65E-08 dispersed
Bda11g00922 Bda-Chr11:9022379 Bda13g00458 Bda-Chr13:5525957 1.78E-08 dispersed
Bda11g00922 Bda-Chr11:9022379 Bda03g00360 Bda-Chr3:3030381 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1716 Blo01g01682 Blo12g00812 . Bda03g00360 Bpe02g00260 Bpe04g00320 Bma04g00337 Bma01g02448 . . Cma01g00877 Cma09g01291 Car01g00802 . Sed03g0698 Cpe06g00975 . Bhi04g02550 Tan11g0043 Cmetu03g0129 . Hepe02g3468 . Lcy10g2361 Cla08g00152 Cam08g0148 Cec08g0103 Cco08g0213 . Cmu08g0149 Cre08g0132 Cone4ag1154 . . . . . . Cme09g00107 . . Bda11g00922 . . . . . Sed11g1774 Cmo01g00920 Cmo09g01249 . . . Car09g01106 . Cpe02g00986 Bhi06g00143 Tan10g1858 Cmetu09g1009 . . . . Cla11g00799 Cam11g0836 Cec11g0820 Cco11g0822 Clacu11g1022 Cmu11g0885 Cre11g1279 Lsi08g00154 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001593 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 2 2 2 2 4 3 2 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00922 Bda_Chr11 FPKM 17.616405 16.607492 16.948219 17.9088 24.96451 23.888754 24.743484 33.194427 34.126919