Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00925 ATGTCTCTGAATATGAAAACTCTGACCCAAGCCCTTGCCAAGACCGCCGCGGTAATTGAGAAAACCGTGCAGACGACTGTTCAGGAGGTTACTGGACCCAAGCCTCTTCAGGATTATGAGCTTCTTGATCAGATCGGATCTGCTGGTCACGCTCTCGCATGGAAATTGTACTCCGCCAAGCCCGCACGTGAGTCTACGCGACCCCAGCAGTACCCCACGGTCTGCGTTTGGGTGTTGGATAAGAAGGCTTTATCCGAAGCTCGTGTGCGGGCGGGGCTGTCCAAAGCAGCCGAGGATGCGTTTTTGGATCTGATTCGCGCAGATGCGGGACGATTGGTGAGGTTGAGGCACCCGGGAGTGGTGCATGTGGTGCAGGCACTGGACGAGAACAAGAATGCCATGGCTATGGTGACGGAGCCATTGTTCGCGTCGGTGGCTAATGTCCTCGGGAATTTCGAAAACGTTGCTAAAGTGCCTAAGGATCTCAAGGACATGGAAATGGGATTGTTGGAGATGAAGCATGGTTTGCTTCAAGTAGCAGAATCCTTGGATTTTCTTCATAACAATGCACGACTTATTCATAGATCTTTAGCACCTGAGAATGTTCTTATTACTTCAAATGGAGCTTGGAAACTAGCTGGATTTGGTTTTGCAATTTCAGCAGAACAAAATTTAGCCGATGCAACTAATATACAAGCTTTTCATTATGCGGAATATGATGTTGAGGATTCTATATTGCCACTTCAGCCATCACTGAATTACACTGCTCCTGAATTGGTGAGGAGCAAATCATCATCAGCTGGATGTCCTTCTGATATTTTCAGTTTTGGATGCATTACTTACCATTTGATTGCTCGAAAACCACTATTTGATTGCCACAACAATGTCAAAATGTACATGAATTCTCTGACATATTTATCCAATGAGGCTTTCTCTCGTATTCCACCGGATTTAGTTCCAGACTTGCAAAAAATGCTCTCTGCCAATGAATCTTTCCGTCTGACAGCAATGGATTTCACTGCTTCTCCATTTTTTCGAGATGACACTAGGTTGCGGGCACTTCGTTTCCTTGACCACATGCTTGAAAGAGATAATATGCAGAAGTCAGAGTTTTTAAAAGCTCTATCAAGCATGTGGAAAGATTTTGATTCTCGAGTACTGCGGTATAAGGTTCTTCCACCTCTTTGTGCTGAACTTCGTAATTTGGTAATGCAATCAATGATTCTTCCCATGGTTCTTACAATAGCAGAATCTCAGGATAAAAATGATTTTGAGCTATCGACACTTCCAGCCCTTGTTCCTGTTCTTAGTACTGCTTCTGGCGATACACTTTTGCTACTTGTGAAACATGCTGAGCTGATAATCAATAAGACTAGCCAGGAGCAGTTAGTATCTCATGTTCTTCCATTGATTGTTCGAGCTTATGATGATAATGATGCTCGTATTCAAGAGGAAGTTTTGAGAAGATCGTCATCCCTTGCTAAGCAGCTTGATCTTCAGCTGGTGAAACAAGCAGTTTTGCCTCGTGTTCATGGCTTGGCTCTCAAGACAACAGTTGCTGCGGTCAGAGTCAATGCTTTGTTGTGCTTAGGAGATTTGGTTAATACACTTGATAAACACGCAGTTCTAGACATCTTGCAAACTATTCAACGCTGTACAGCAGTTGATCGTTCTGCACCTACACTTATGTGCACACTTGGTGTTGCAAACTCGATTCTGAAGCAGCATGGAGTAGAGTTTGTTACCGAGCATGTACTCCCGCTGCTCATGCCCCTACTAACTGCTCAACAGTTGAATGTTCAGCAGTTCGCAAAATATATGCTGTTTGTCAAGGACATTCTCAGGAAGATAGAAGAAAAGCGGGGGGTGATTTTGACTGATTCTGGAATGCCAGAGGTAAAATCATCTGTTGCCTCTAATGGGAGTCAGTTCCAATCATCCAACAAGCATATCGGTACTGTGCCTTCTACTACAAAGAGCAGTCCGGCCTGGGATGAAGACTGGGGCCCTACTGCTAGGGGAACTAATTCTCAACAAATTTCTACAAATATTCCTGCTTTGAGTACTCACTCAAATCAAATGCAGGCAACCATGCCTGCAAAAACTAGTAATCAACCTGCTATTTCGTGCACGCCAGTTGACATTGAATGGCCTCCTCGATTCTCTTCTGGAGTGACCTCCCAGTTAGGTGATTCTGTAAAGCAATCAGCTGCTGGGTCATCGACCAGTTCAAGCTTTGGAGATATGGACCCATTTGCAAACTGGCCCCCAAGACCTAGCAGCGCATCAAGTGCATCTAAAACCTCCAACAATGGCTCAATGGGACAATCTTTAAACAACAGTGAATCTAACACAAGCTTACGTAGACCCATTGATTTGAACTTCCCAAGTAGCAGTAACATGAGTTGGACTCTCAACAACCAAAGCTCAAGTGAACAAAAAAGTTGGACTCAAGGAAATTCAGCGATCAATTCAAGCAATCTTGCCATTGGAGCTTTCAGTTGTCAGAATTCTATAGGGATATCAAAACAGAACCCTGGGGCCTCATCTTTAAGTAATTATGCAGAAAAGAAATCCAGTGATCCAGGATCTTTATTTAAAAATGAGGTGAGTGCACTCAGACTTGCTCCACCACCCTCAACTGCTGTTGGCAGAGGAAGAGGAAGAGAGAGGGTTTCATCTGTGCGTCCCAATCACACAAAATCTCCATCCGAACAGCCTCCACTTTTGGATTTGCTGTGA 2742 44.31 MSLNMKTLTQALAKTAAVIEKTVQTTVQEVTGPKPLQDYELLDQIGSAGHALAWKLYSAKPARESTRPQQYPTVCVWVLDKKALSEARVRAGLSKAAEDAFLDLIRADAGRLVRLRHPGVVHVVQALDENKNAMAMVTEPLFASVANVLGNFENVAKVPKDLKDMEMGLLEMKHGLLQVAESLDFLHNNARLIHRSLAPENVLITSNGAWKLAGFGFAISAEQNLADATNIQAFHYAEYDVEDSILPLQPSLNYTAPELVRSKSSSAGCPSDIFSFGCITYHLIARKPLFDCHNNVKMYMNSLTYLSNEAFSRIPPDLVPDLQKMLSANESFRLTAMDFTASPFFRDDTRLRALRFLDHMLERDNMQKSEFLKALSSMWKDFDSRVLRYKVLPPLCAELRNLVMQSMILPMVLTIAESQDKNDFELSTLPALVPVLSTASGDTLLLLVKHAELIINKTSQEQLVSHVLPLIVRAYDDNDARIQEEVLRRSSSLAKQLDLQLVKQAVLPRVHGLALKTTVAAVRVNALLCLGDLVNTLDKHAVLDILQTIQRCTAVDRSAPTLMCTLGVANSILKQHGVEFVTEHVLPLLMPLLTAQQLNVQQFAKYMLFVKDILRKIEEKRGVILTDSGMPEVKSSVASNGSQFQSSNKHIGTVPSTTKSSPAWDEDWGPTARGTNSQQISTNIPALSTHSNQMQATMPAKTSNQPAISCTPVDIEWPPRFSSGVTSQLGDSVKQSAAGSSTSSSFGDMDPFANWPPRPSSASSASKTSNNGSMGQSLNNSESNTSLRRPIDLNFPSSSNMSWTLNNQSSSEQKSWTQGNSAINSSNLAIGAFSCQNSIGISKQNPGASSLSNYAEKKSSDPGSLFKNEVSALRLAPPPSTAVGRGRGRERVSSVRPNHTKSPSEQPPLLDLL 913
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9049494 9059224 - Bda005680.1 Bda11g00925 16033

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00925 913 SUPERFAMILY Protein kinase-like (PK-like) 34 349 IPR011009 -
Bda11g00925 913 Gene3D Phosphorylase Kinase; domain 1 36 139 - -
Bda11g00925 913 MobiDBLite consensus disorder prediction 846 913 - -
Bda11g00925 913 MobiDBLite consensus disorder prediction 703 819 - -
Bda11g00925 913 Gene3D - 349 622 IPR011989 -
Bda11g00925 913 CDD PK_SCY1_like 45 347 - -
Bda11g00925 913 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 7 913 - -
Bda11g00925 913 MobiDBLite consensus disorder prediction 636 664 - -
Bda11g00925 913 SMART serkin_6 39 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda11g00925 913 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 7 913 - -
Bda11g00925 913 MobiDBLite consensus disorder prediction 721 749 - -
Bda11g00925 913 MobiDBLite consensus disorder prediction 757 819 - -
Bda11g00925 913 SUPERFAMILY ARM repeat 316 608 IPR016024 -
Bda11g00925 913 Gene3D Transferase(Phosphotransferase) domain 1 152 348 - -
Bda11g00925 913 MobiDBLite consensus disorder prediction 636 678 - -
Bda11g00925 913 ProSiteProfiles Protein kinase domain profile. 39 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda11g00925 913 Pfam Protein kinase domain 112 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00925 K17541 SCYL2; SCY1-like protein 2 - jre:109001398 1305.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01152 Bda-Chr7:13630336 Bda11g00925 Bda-Chr11:9049494 1.22E-22 dispersed
Bda11g00925 Bda-Chr11:9049494 Bda03g01026 Bda-Chr3:9679395 9.02E-18 dispersed
Bda11g00925 Bda-Chr11:9049494 Bda14g00997 Bda-Chr14:8181357 2.34E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1693 Blo01g01678 . . . Bpe02g00263 . . Bma01g02446 . . Cma01g00863 Cma09g01302 Car01g00792 . . Cpe06g00982 . . . . . . . . Cla08g00080 Cam08g0077 Cec08g0174 Cco08g0134 Clacu08g0090 Cmu08g0089 Cre08g0078 Cone4ag1158 . . . . . . Cme09g00077 . . Bda11g00925 . . . . . . Cmo01g00908 . . . . Car09g01114 . Cpe02g00993 . . . . . . . . . . . . . . Lsi08g00097 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006310 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 3 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69912 PF00069 Pkinase 2.70E-24 CL0016 Bda PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00925 Bda_Chr11 FPKM 1.600795 2.557575 2.109421 1.699343 4.640435 4.5857 6.60976 4.792421 4.956928