Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00935 ATGAATTCATTTATTGCTTCTGCAACCACCGCCTTCTCTTCCCTATTAAACTTCACCTTCCCGTTATCTCTTAAACCATCAAGTGCCCTCTTTTCCTTCTCTGTCCCTCTCTCTCTCGAACACTCTCGCTCGGAAACAGTCGTAGAGGAAACTGGTGGAGGTTCGGCCATGGCGGAGCTGAGGATGGTTTCGTTGTCTGTTCTGTTGATGGTGTTTCTGGGTGCAGTTTCTGGGCAGGATGGAGATCCGTTTCCGCAAGGTGGAGGGAGGAGAGAGATGGTTCCTGCTATGTTTATATTCGGAGACTCGCTCATTGACAATGGAAATAACAATAACCTTCCTTCCTTAGCAAAAGCTAACTACTTTCCTTATGGCATCGACTTCAATGGCGGACCCACTGGTCGTTTTTCCAATGGTTACACCATGGTTGATGAAATAGCTGAGCTGTTGGGACTTCCATTAATTCCTCCATTTTCTGAAGCTTCTGGGAACCAAGTTCTTCACGGCGTCAACTACGCTTCTGCTGCAGCTGGAATTCTCGACGAGACCGGGAGAAACTTTGTGAGTCGAATTCCGTTCAATCAGCAAATAAGCAACTTTCAGAACACCCTCGACCAGATTACCAACAGTCTTGGAGGTCCAGATAATATCGCAAGAGCGATCGGACGGAGCATATTCTTTGTCGGAATGGGTAGTAATGACTACTTAAACAACTACCTGATGCCAAATTACAACACGAAAAACCAGTATGACGGTCCACAGTTCGCCAATCTTTTGGTTCAGCAGTACTCCCAGCAGCTAAGTAGACTTTATAATCTTGGAGCAAGGAAATTTGTAGTAGCTGGTGCGGGGCAGATGGGTTGCATTCCAAGCATATTAGCTCAGAACCCAGTTGGAAGCTGCTCGGAAGAAGTAAACCAGCTCATTCTAACTTTCAATTCTAATGTCAAGGCAATGGTCAACAATCTCAACGCCAATCTCCCCGGCTCTCGATTTACTTACGTCGACATTGCTCGAATGTTCCAAGACATCCTCAGCAACCCCCGATCTTACGGTACGTTTAATTTTTCAGCTCTCTTCTGCTACATCGGAATACTGAGAAGTCGGAATATCGAATGTACCCGTGCAGGATTCAGCGTGATAAACAGAGGATGCTGTGGAATTGGAAGGAACAGAGGGCAAATAACTTGTCTGCCATTTCAGACGCCATGTCCAAACAGAGATCAATATGTTTTTTGGGACGCGTTTCATCCGACAGAAGCTGTCAACATTATAATGGGGAGGAAGGCTTTTAATGGAGACACTAGCGTGGTTTATCCTATGAACATAGAGCAACTTTCCAATCTTTGA 1350 45.56 MNSFIASATTAFSSLLNFTFPLSLKPSSALFSFSVPLSLEHSRSETVVEETGGGSAMAELRMVSLSVLLMVFLGAVSGQDGDPFPQGGGRREMVPAMFIFGDSLIDNGNNNNLPSLAKANYFPYGIDFNGGPTGRFSNGYTMVDEIAELLGLPLIPPFSEASGNQVLHGVNYASAAAGILDETGRNFVSRIPFNQQISNFQNTLDQITNSLGGPDNIARAIGRSIFFVGMGSNDYLNNYLMPNYNTKNQYDGPQFANLLVQQYSQQLSRLYNLGARKFVVAGAGQMGCIPSILAQNPVGSCSEEVNQLILTFNSNVKAMVNNLNANLPGSRFTYVDIARMFQDILSNPRSYGTFNFSALFCYIGILRSRNIECTRAGFSVINRGCCGIGRNRGQITCLPFQTPCPNRDQYVFWDAFHPTEAVNIIMGRKAFNGDTSVVYPMNIEQLSNL 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9129505 9131279 + Bda005690.1 Bda11g00935 16043

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00935 449 Gene3D SGNH hydrolase 90 434 IPR036514 -
Bda11g00935 449 PANTHER OS05G0419800 PROTEIN 60 449 - -
Bda11g00935 449 CDD SGNH_plant_lipase_like 95 434 IPR035669 -
Bda11g00935 449 Pfam GDSL-like Lipase/Acylhydrolase 98 428 IPR001087 GO:0016788
Bda11g00935 449 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 60 449 - -
Bda11g00935 449 SUPERFAMILY SGNH hydrolase 171 429 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00935 - - - rcu:8263240 573.163
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00412 Bda-Chr4:51668425 Bda11g00935 Bda-Chr11:9129505 7.97E-116 dispersed
Bda07g00955 Bda-Chr7:11069069 Bda11g00935 Bda-Chr11:9129505 2.52E-127 dispersed
Bda11g00915 Bda-Chr11:8956790 Bda11g00935 Bda-Chr11:9129505 9.19E-119 dispersed
Bda11g00935 Bda-Chr11:9129505 Bda11g01418 Bda-Chr11:18723265 3.96E-83 dispersed
Bda02g00594 Bda-Chr2:46823903 Bda11g00935 Bda-Chr11:9129505 1.70E-47 transposed
Bda11g00935 Bda-Chr11:9129505 Bda03g00345 Bda-Chr3:2912657 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1660 Blo01g01668 Blo12g00832 . . Bpe02g00274 Bpe04g00304 . . . . Cma01g00840 . . . . . . Bhi04g02590 . . . . . . . . . . . . . . . . . . . . Cme09g00036 . . Bda11g00935 . . . . . . Cmo01g00880 Cmo09g01300 . . . Car09g01143 . . . . . . . . . . . . . . . . Lsi08g00047 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002428 2 2 3 2 3 2 2 1 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 3 2 3 61