Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00940 ATGGAAGTGAGTTCAGGTTTAGTGGCAGGCTCTCACAACAGGAATGAAATTGTTATCATTCGCAGCAACGGGGAATCTGGCAAAAAACCATTTGAGCAGTCGAGTGGAAAATTATGCCAGATTTGTGGAGATGATGTAGGACTAAGTGCTGAAAGAGAGGTGTTTGTTGCCTGCAACGAGTGTGCCTTTCCGATTTGCCGGACCTGCTACGAGTACGAACGCCGAGAAGGAAATCAAGTCTGCCCTCAGTGCAAGACCAGATTTAAACGTATTAAAGGTTGTGCAAGAGTTGAAGGAGATGAAGAAGAAGACGACGTTGATGACTTGGACAATGAATTTGATTTCCACGAACAAAGTAAGCGGGATATGCATCGACCTCAAGCAGCTGATTCCGATATTTCTCTCTTCGCTAATTGTCGATTGGTATCGCCGATGAAATCCACCCCGAAGAATGTGCTTCATTCCCTCCACTGGCAGGTGCTACTCCAATCTCAGATCCCATCATTCAATGTCACTGCTGACTTCTTTCAAAATTTTAACCTTAGACACAATGCTTCAACTACAGTGCATCCAAGACCAATGGATCCTTCCAAAGACCTAGCTGTATATGGCTATGGAAGCATTGCCTGGAAGGAGAGGATGGAGAGTTGGAAACGGAGGCAAAATGAACTACAGATGATGAACAATGATGGGTGGAAAAACTTGGATCATGATGAAGATGATCCAGATGTGCCTCTAATGGATGAGGCCAGACAGCCATTGTCAAGAAAGTTGCCAATTCCATCGAGCCAAATCAACCCATATCGAATGATCATCGTTATTAGGATGGTTGTTATGGGGTTCTTTTTCCATTATCGAGTTACACATCCCGTGTGGGATGCCTATATTCTGTGGCTCGTATCAGTAATATGCGAGATTTGTTTTGCCATTTCATGGATTCTTGATCAATTCCCAAAGTGGCTCCCCATCGGCCGAGAAACTTATCCTTGTAGGTTGTCTCTCCGGTATGAGAAAGAAGGCCAACCTTGTCAACTGTCAGCAATTGATATATTTGTCAGCACAGTTGATCCATCAAAAGAACCTCCTCTGGTGACTGCAAACACACTTCTTTCCATTCTTGCAGTTGATTATCCTGCTGATAAGGTTTCTTGCTATGTTTCGGATGATGGTGCGGCCATGCTAACTTTCGAGGCACTCTCGGAAACAGCTGAGTTTGCTAGGAAATGGATCCCTTACTGCAAGAAGTTTAAAATCGAACCAAGGGCCCCCGAACGCTATTTTGATCAGAAAGTTGACTATTTCTCCGATAAAGTCCTACCGTCTTTCGTGAAGGAGCGGAGAGCCATGAAGAGAGAGTATGAAGAATTTAAAGTTCGGATCAATTCTTTGGTTGCAAAGTCTAAGAAGGTCCCGGATGAAGGGTGGACGATGCAGGACGGGACTTTGTGGCCGGGAAACAACGGTCGAGATCATCCCGGGATGATTCAGATTTTTCTCGGACAAACCGGAGGCTACGATGCCGATGGGAATGAATTACCCTGCATGGTTTATATGTCTAGAGAGAAGAGGCCTGGCTTTAATCACAACAACAAGGCTGGAGCAATGAATTGTCTAGTTCGAGTGTCGGCTGTACTCACAAATGCGCCTTATGTGTTGAACTTAGACTGTGATCACTACATCAACAGTAGTAATGCTCTTAGGGAGGCTATGTGTTTTATGATGGATCCTTTGGTCGGAAAGAGAGTTTGCTACGTTCAGTTCCCACCGTGTAATCGAAACGCTGTTTTTTCCGACATAAACACGAAAGGTTTGGACAGTATTCAAGGACCGATATATGTCGGGACTGGATGCGTCTTCAGAAGGCTGGCTCTCTACGGTTATGATGCTCCAAAACCGAAGAAATCGCCAGCGAAAACATGCAACTGCTGGCTGAAGTGGTGCTGTTTTGATTGCTGTTTTTCTGCAAAGCCGCATACGAGGAAGCCTAAAGCCGAGGGGACAAAAAATATTTCTGGAAATGAAGAACTGGAAGAGCTACTTGCCTGTTCCTCAGATAGTACACAGGAGAGCATTGATGGTAAGCTGGCAAAGAAGTTCGGGCAGTCTCCTGTGTTTGCTGCATCGACACTCGGAGAACTGAAACGAACTAGCCCCGAATCTTCGCTCAAAGAAGCTATTCATGTCATTAGCTGTGGCTATGAGGATAAAACGGAATGGGGAAATGAGGTTGGTTGGATCTATGGTTCAGCCACTGCAGATATACAGACTGGCTTAAAAATGCACTGTCGTGGATGGAGATCGATATATTGCGTACCCGAAAGACCTGCATTCAAAGGGTCTGCCCTGATTGATCTTTCGGATCGACTCCACCAAGTTCTTCGATCGGCCATTGGCTCCATTGAACTCGGCAAAGTGGCTGGCTTGTGGTTTATCTCTCTTTTTATGTGCATATTTGCAACCAGTCTGCTGGAAATGAAGTGGGGAGGAGTCGGAATCGGAGAGTGGTGGAGAAACGAGCAGTTTTGGGTGATTGATGGAGTCTCAGCCCATCTTTTTGCAGTCTGCCAGGGGCTGTTAAAGGTCATAGCCGGCGTCGAGACATCGAAAACAGGGGATGGTGAAGAGTTTTCCGAATTTTGTGCATTCAAACGGAGAATTTTACTCTTTCCACCGACAAGTCTGCTCGTCATAAACTTGATTGGGGTAGTGTTTGGAGTGTCAAGTGTGATAAATAATGGGTTTGAATCATGGGGGCCGCTGCTTGGGAAGCTATGTTTTGCGTTGTGGGTGATTGTTCACTTGTATCCTCTCTTAAAGGGTGTCTTGGGTGGGCAGAATAAGACTCCAACAATAATCTTAGTCTGGTCAGTCTTGCTTGCCTCTCTCTTTTCTATTCTCTTGGTTCAAATGGGACCATTTTCGGCCAAGACAGATGCTACGTTCTTGGACGAATGCGGGGTGGACTGTGTTTAG 2973 45.54 MEVSSGLVAGSHNRNEIVIIRSNGESGKKPFEQSSGKLCQICGDDVGLSAEREVFVACNECAFPICRTCYEYERREGNQVCPQCKTRFKRIKGCARVEGDEEEDDVDDLDNEFDFHEQSKRDMHRPQAADSDISLFANCRLVSPMKSTPKNVLHSLHWQVLLQSQIPSFNVTADFFQNFNLRHNASTTVHPRPMDPSKDLAVYGYGSIAWKERMESWKRRQNELQMMNNDGWKNLDHDEDDPDVPLMDEARQPLSRKLPIPSSQINPYRMIIVIRMVVMGFFFHYRVTHPVWDAYILWLVSVICEICFAISWILDQFPKWLPIGRETYPCRLSLRYEKEGQPCQLSAIDIFVSTVDPSKEPPLVTANTLLSILAVDYPADKVSCYVSDDGAAMLTFEALSETAEFARKWIPYCKKFKIEPRAPERYFDQKVDYFSDKVLPSFVKERRAMKREYEEFKVRINSLVAKSKKVPDEGWTMQDGTLWPGNNGRDHPGMIQIFLGQTGGYDADGNELPCMVYMSREKRPGFNHNNKAGAMNCLVRVSAVLTNAPYVLNLDCDHYINSSNALREAMCFMMDPLVGKRVCYVQFPPCNRNAVFSDINTKGLDSIQGPIYVGTGCVFRRLALYGYDAPKPKKSPAKTCNCWLKWCCFDCCFSAKPHTRKPKAEGTKNISGNEELEELLACSSDSTQESIDGKLAKKFGQSPVFAASTLGELKRTSPESSLKEAIHVISCGYEDKTEWGNEVGWIYGSATADIQTGLKMHCRGWRSIYCVPERPAFKGSALIDLSDRLHQVLRSAIGSIELGKVAGLWFISLFMCIFATSLLEMKWGGVGIGEWWRNEQFWVIDGVSAHLFAVCQGLLKVIAGVETSKTGDGEEFSEFCAFKRRILLFPPTSLLVINLIGVVFGVSSVINNGFESWGPLLGKLCFALWVIVHLYPLLKGVLGGQNKTPTIILVWSVLLASLFSILLVQMGPFSAKTDATFLDECGVDCV 990
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9195821 9199962 - Bda005698.2 Bda11g00940 16048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00940 990 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Bda11g00940 990 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Bda11g00940 990 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 26 802 - -
Bda11g00940 990 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 801 989 - -
Bda11g00940 990 SUPERFAMILY Nucleotide-diphospho-sugar transferases 360 768 IPR029044 -
Bda11g00940 990 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 26 802 - -
Bda11g00940 990 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 801 989 - -
Bda11g00940 990 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 508 629 IPR029044 -
Bda11g00940 990 Coils Coil 446 466 - -
Bda11g00940 990 Pfam Cellulose synthase 348 802 IPR005150 GO:0016020|GO:0016760|GO:0030244
Bda11g00940 990 SUPERFAMILY RING/U-box 24 111 - -
Bda11g00940 990 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Bda11g00940 990 Pfam Zinc-binding RING-finger 29 106 IPR027934 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00967 Bda-Chr7:11564351 Bda11g00940 Bda-Chr11:9195821 1.22E-08 dispersed
Bda11g00940 Bda-Chr11:9195821 Bda14g01064 Bda-Chr14:9146473 0 dispersed
Bda11g00940 Bda-Chr11:9195821 Bda01g00738 Bda-Chr1:34669730 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00940 K10999 - zju:107416055 1381.31