Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00955 ATGGCATCATTTGTTGGTGCGATGGCCATTGCTGATTTAGTCAAAACAACCTTAGGCCCAAAAGGAATGGACAAAATTTTGCAATCTACTGGCAGAGGACGTTCTGTGACTGTTACAAATGATGGGGCCACCATTTTAAAGTCTCTTCATATTGATAACCCAGCTGCTAAAGTTCTAGTTGAAGTTACAGACATTTCAAAAGTTCAAGATGACGAAGTGGGTGATGGAACAACCTCTGTTGTTGTCTTGGCGGGAGAGCTTTTAAGAGAAGCAGAGAAGCTGATTGCAGCTAAGATTCATCCGATGACAATCATATCAGGCTATAGAATGGCGGTAGAATGCGCACGCAATGCACTGTTGGAAAAAGTTGTTGATAACAAAGACAATTCAGAGATGTTCAAATCAGACTTGATGAGGATTGCGATGACTACCTTGAGCTCTAAAATTCTCTCACAGGACAAAGAACATTTTGCAACACTGGCTGTGGATGCTGTAATGAGGCTAAAGGGAAGCACAAACTTAGAGTCAATTCAAATCATAAAGAAGCCTGGAGGATCATTGAAGGATTCTTTTCTCGATGAAGGATTCATTCTTGACAAGAAAATTGGTATTGGGCAACCCAAGCGCATTGAGAATGCAAATATTTTGGTGGCAAATACAGCAATGGACACAGATAAAGTCAAAATCTATGGTGCCCGAGTTCGTGTTGATTCAATGTCGAAGGTTGCTGAGATTGAGGGAGCTGAGAAGGAAAAAATGAGAGAGAAGGTTCAAAAGATTATAGGTCATGGCATTAATTGCTTTGTTAATCGACAGTTGATCTATAATTTCCCAGAGGAGCTTTTTGCTGATGCGGGAATACTTGCTATTGAGCATGCTGATTTTGATGGTATTGAACGTCTGGCTTTAGTAACTGGTGGTGAAATTGCATCAACTTTTGACAATCCTGAATCTGTCAAACTTGGGCATTGCAAACTCATTGAGGAGATCATGATTGGCGAGGACAAGTTGATCCACTTTTCAGGCGTTGAAATGGGCCAGGCATGTACAATAGTTTTAAGAGGAGCTAGCCATCACGTTCTTGACGAGGCAGAAAGGTCTCTGCATGATGCTTTGTGCGTATTATCCCAAACAGTCATTGACAGTAGGGTTCTGCTTGGGGGTGGATGGCCGGAGATGATCATGGCTAAAGAAGTGGATGAGCTGGCTAGGAAGACTCCCGGCAAGAAATCACACGCTATTGAAGCTTTCTCAAGGGCACTTTTAGCAATCCCCACCATCATTGCTGATAATGCTGGGCTGGACAGTGCTGAGTTAATTTCCCAGCTTCGTGCTGAACACCATAAGGAAGGTTGCACTGCCGGGATTGATGTCATCTCAGGATCCGTGGGAGACATGGCAGAACGGGGAATCTCAGAAGCATTTAAAGTGAAGCAAGCAATATTGCTATCTGCAACAGAGGCGGCAGAGATGATTCTTAGAGTTGATGAAATCATCACATGCGCTCCACGGAGGAGAGAAGATAGAATGTGA 1533 43.18 MASFVGAMAIADLVKTTLGPKGMDKILQSTGRGRSVTVTNDGATILKSLHIDNPAAKVLVEVTDISKVQDDEVGDGTTSVVVLAGELLREAEKLIAAKIHPMTIISGYRMAVECARNALLEKVVDNKDNSEMFKSDLMRIAMTTLSSKILSQDKEHFATLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENANILVANTAMDTDKVKIYGARVRVDSMSKVAEIEGAEKEKMREKVQKIIGHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVIDSRVLLGGGWPEMIMAKEVDELARKTPGKKSHAIEAFSRALLAIPTIIADNAGLDSAELISQLRAEHHKEGCTAGIDVISGSVGDMAERGISEAFKVKQAILLSATEAAEMILRVDEIITCAPRRREDRM 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9326300 9330773 - Bda033067 Bda11g00955 16063

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00955 510 PANTHER BNAA02G05110D PROTEIN 1 508 IPR012716 GO:0005524|GO:0005829|GO:0005832|GO:0006457|GO:0016887|GO:0051082
Bda11g00955 510 TIGRFAM chap_CCT_beta: T-complex protein 1, beta subunit 2 506 IPR012716 GO:0005524|GO:0005829|GO:0005832|GO:0006457|GO:0016887|GO:0051082
Bda11g00955 510 Gene3D - 7 499 IPR027413 -
Bda11g00955 510 SUPERFAMILY GroEL apical domain-like 189 355 IPR027409 -
Bda11g00955 510 SUPERFAMILY GroEL equatorial domain-like 3 502 IPR027413 -
Bda11g00955 510 Pfam TCP-1/cpn60 chaperonin family 10 500 IPR002423 GO:0005524
Bda11g00955 510 ProSitePatterns Chaperonins TCP-1 signature 1. 15 27 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Bda11g00955 510 SUPERFAMILY GroEL-intermediate domain like 133 381 IPR027410 -
Bda11g00955 510 CDD TCP1_beta 1 505 IPR012716 GO:0005524|GO:0005829|GO:0005832|GO:0006457|GO:0016887|GO:0051082
Bda11g00955 510 Gene3D - 125 382 IPR027410 -
Bda11g00955 510 PANTHER CHAPERONIN 1 508 IPR017998 GO:0140662
Bda11g00955 510 Gene3D GroEL 194 346 IPR027409 -
Bda11g00955 510 ProSitePatterns Chaperonins TCP-1 signature 3. 69 77 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Bda11g00955 510 ProSitePatterns Chaperonins TCP-1 signature 2. 38 54 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Bda11g00955 510 PRINTS Tailless complex polypeptide 1 (chaperone) signature 350 372 IPR017998 GO:0140662
Bda11g00955 510 PRINTS Tailless complex polypeptide 1 (chaperone) signature 69 88 IPR017998 GO:0140662
Bda11g00955 510 PRINTS Tailless complex polypeptide 1 (chaperone) signature 12 28 IPR017998 GO:0140662
Bda11g00955 510 PRINTS Tailless complex polypeptide 1 (chaperone) signature 384 396 IPR017998 GO:0140662
Bda11g00955 510 PRINTS Tailless complex polypeptide 1 (chaperone) signature 36 54 IPR017998 GO:0140662
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00955 K09494 CCT2; T-complex protein 1 subunit beta - zju:107422720 933.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01650 Bda-Chr7:30728927 Bda11g00955 Bda-Chr11:9326300 7.47E-80 dispersed
Bda11g00421 Bda-Chr11:4484513 Bda11g00955 Bda-Chr11:9326300 1.42E-70 dispersed
Bda11g00955 Bda-Chr11:9326300 Bda11g01779 Bda-Chr11:52651398 2.44E-86 dispersed
Bda14g01201 Bda-Chr14:11966672 Bda11g00955 Bda-Chr11:9326300 4.87E-51 dispersed
Bda11g00955 Bda-Chr11:9326300 Bda13g00318 Bda-Chr13:4053045 2.81E-89 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g138 Blo01g01618 . . . Bpe02g00326 . . Bma01g02393 . . Cma01g01996 . Car01g01568 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00955 . . . . . . Cmo01g02057 . . . . . . Cpe02g00049 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005792 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 3 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00955 Bda_Chr11 FPKM 1.107005 0.0 0.0 1.458413 1.267594 1.127781 1.232226 1.549191 1.842971