Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00963 ATGCGCAGAGCAAGGATTCCTCGGCGGTCAATAGCGGGCTCATTTAACAAATCAAAACCGATTGTAAATGAACAAAAGAGGCTTGCGGACACATTTAACTATTTTTCGTCTCATGAAACCTTTTCCGGTCACGACTTTTTTAATTATGGAGTGGAATCAACAAGAAGGTCTATGCAGATGCAAATTGTTGAAGCACTTAGCTTGGGTGAGAAAAGCAGAGCTTCCAATTTACTTTTGGATCTTGGCCAAGGAAATTGTTCTTTAACTGCCAGCGATTTCTTATATATTCTCAGATATTGTGCAACAGCACCCGATCCAGTGTTTGTAATGGAGACTTGGAGGATAATGAAAGAAAAGAAGATTTGGCTTGATAACAGGTGCTCCTTGCTCATGATAAAAGCACTTTGCGAAGGGGGTTGTTTTGACGAGGCATTGGGGTTGATTAATTTTCTCAGAGAAAGCCATGGGAACTATTCTATTCTTACGTTGTACAATTTTTTTCTAAGAGCCTGTTCTAAATTGCAAAGTCCAAGTCATCCCAATCAATGTTTGGATCTGATGGAGCAGAATATGGTGGGGAAAAATGAAGTGACGTACCTAGAGCTTCTGAAGGTTGCGGTTTGGCAGCAAAACCTATCTGCAGTCCATCACATCTGGAAGGACTATATGAAAAATTACAGTCTGAACATTTTACCTCTGCAGAAATTTATTCGGTCTTTTGCAAGGTTGGGAGATTTAAATTCTGCATATGAAAAATTGCAACAGATGGTAGCTTTGGTCATTCAGGGAAATACCTATGTTCATAAAACTGCAAAAGGGAAGCATTATTCGACAAGAATAGATATTCCTATACCTTTAAAAAGTGATTTTCACTCCAAGTTAGATTTCAACGAGAGCATTTATTCTGCTTCCGCCTCATCAAGTGATAAACCAGGTGCCCTTGCTAGTGACATAATCCTATCGAACATTTCTGGCTTGACAGACAGAAGGAATGTGAATGGTGGAGTAGGTTATATGAATAGGTGTAACAGCAGTAGTTCTGGGAAGCTTTTAAGGTGGTCTTTTAATGATGTGATACATGCATCTGCACATGGGGAAAACTGTGGTCTAGCAAAGCAGTTATTACTACAGATGGAAAATCTTGGCCTGCAACCTTCAAGGCATACGTATCATGGTATTGTTAAAGCAGTTATTTCAGAGGGCAGTTTCAGTGATGGAATTGATGTGCTGAAAATAATGCAACAGAGGAACTTGAAGCCAAATCCTTCAACTCTTGCAACTCTTTCAATTTGTTGCAGTGAAGTTCTTGAGTTAGATTTGGCTGAAGCTTTACTGGAACAAGTTTCTCATTGTCCATATCCACATCCTTTTAACAAATTTCTTGCTGCATGTGACATGATGGACCAACCAGAACGTGCTATCCGGATATTGACCAAAATGAAGCAGTTGAAACTTCAGCCAGATATCAGGACATATGAGCTCATGTTTTCACAATTTGGCAATGTGAATGTACCTTATGAGAGGCCGGATTTATTATCACAGGCAAATTCCTCCAAAAGAATAAGTGCAATAGAGATGTACATGGCGAGGAATGGAGTTCAGCATAGTCATTTATCTATGAAGAACTTGTTAAAAGCTCTTGGACGTGAGGGGATGATAAGAAAGCTGCTTCAGTATTTGCATGTGGCAGAGAACCTTTTCTGTCGTAATAATACTTATTTGGGAATACCTATTTATAACGTAGTGTTGCATTCCTTAGTTAAAGCCAATGAAAGTGACAAGGCTCTTGAGATCTTTGAAGATTTGATGTATAGTGGTTCCCTCCCGGACACAACAACTTATAATATAATGATAAATTGTTGTAGCATTATACAATGCTTTAAATCTGCATGTGCACTGCTTTCCATAATGGTCCGCAAAGGATTTGGTCCAGAAGCATCAACTTACACTAAGTTACTAAAGATTGTGTTGAATGAGGACAATTTTAAGGAAGCATTTAATATTATGGATCGAGCTTGTTCCGAAGAGAGAGAACTTGATGTTATTTTGTTTAATACTATCCTGAAAAAAGCTGCTGAAAAGGGGAGGATTGATATAATTGAGATCATCGTGGAAAAAATGCACCGTTGTGATGTACAGCCTGACACGTCAACATGCTCTTTTGTTTTCTCTGCATACATGGAGCATGGTTTTCACAACACTGCTGTGGAAGCATTGCAAGTTTTGAGCATGCGAATGCTATGTAGAAAAGATGGCACTATTCCAGATATTACGGATTACGATGATATCATTTTTGACGAAGGTTCTGAATCTGAGAGTCAGATTTTGAAAATTTTTAACGATGGAGGTGAGAATCTTGCTGCGGCTCTTTTAAATTTAAGGTGGTCAGCAATGCTTGGATTCTCAGTTTCACAGGATCCAAATGAAAGCCCTTGGTCAAACAGACTCGCCCAATCATTTGATATCGAAGGACATTAA 2478 38.86 MRRARIPRRSIAGSFNKSKPIVNEQKRLADTFNYFSSHETFSGHDFFNYGVESTRRSMQMQIVEALSLGEKSRASNLLLDLGQGNCSLTASDFLYILRYCATAPDPVFVMETWRIMKEKKIWLDNRCSLLMIKALCEGGCFDEALGLINFLRESHGNYSILTLYNFFLRACSKLQSPSHPNQCLDLMEQNMVGKNEVTYLELLKVAVWQQNLSAVHHIWKDYMKNYSLNILPLQKFIRSFARLGDLNSAYEKLQQMVALVIQGNTYVHKTAKGKHYSTRIDIPIPLKSDFHSKLDFNESIYSASASSSDKPGALASDIILSNISGLTDRRNVNGGVGYMNRCNSSSSGKLLRWSFNDVIHASAHGENCGLAKQLLLQMENLGLQPSRHTYHGIVKAVISEGSFSDGIDVLKIMQQRNLKPNPSTLATLSICCSEVLELDLAEALLEQVSHCPYPHPFNKFLAACDMMDQPERAIRILTKMKQLKLQPDIRTYELMFSQFGNVNVPYERPDLLSQANSSKRISAIEMYMARNGVQHSHLSMKNLLKALGREGMIRKLLQYLHVAENLFCRNNTYLGIPIYNVVLHSLVKANESDKALEIFEDLMYSGSLPDTTTYNIMINCCSIIQCFKSACALLSIMVRKGFGPEASTYTKLLKIVLNEDNFKEAFNIMDRACSEERELDVILFNTILKKAAEKGRIDIIEIIVEKMHRCDVQPDTSTCSFVFSAYMEHGFHNTAVEALQVLSMRMLCRKDGTIPDITDYDDIIFDEGSESESQILKIFNDGGENLAAALLNLRWSAMLGFSVSQDPNESPWSNRLAQSFDIEGH 825
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9394554 9401417 - Bda005723.3 Bda11g00963 16071

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00963 825 Pfam PPR repeat 131 153 IPR002885 -
Bda11g00963 825 MobiDBLite consensus disorder prediction 804 825 - -
Bda11g00963 825 Gene3D Tetratricopeptide repeat domain 577 760 IPR011990 GO:0005515
Bda11g00963 825 Gene3D Tetratricopeptide repeat domain 452 574 IPR011990 GO:0005515
Bda11g00963 825 Gene3D Tetratricopeptide repeat domain 55 227 IPR011990 GO:0005515
Bda11g00963 825 Gene3D Tetratricopeptide repeat domain 345 451 IPR011990 GO:0005515
Bda11g00963 825 Pfam PPR repeat family 578 621 IPR002885 -
Bda11g00963 825 TIGRFAM PPR: pentatricopeptide repeat domain 578 610 IPR002885 -
Bda11g00963 825 TIGRFAM PPR: pentatricopeptide repeat domain 613 644 IPR002885 -
Bda11g00963 825 Pfam Pentatricopeptide repeat domain 457 501 IPR002885 -
Bda11g00963 825 Pfam Pentatricopeptide repeat domain 634 689 IPR002885 -
Bda11g00963 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Bda11g00963 825 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 821 - -
Bda11g00963 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 575 609 IPR002885 -
Bda11g00963 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 610 644 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00963 - - - qlo:115974617 967.607
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00963 Bda-Chr11:9394554 Bda03g00376 Bda-Chr3:3146217 1.26E-14 dispersed
Bda11g00963 Bda-Chr11:9394554 Bda08g01169 Bda-Chr8:46723082 7.13E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g114 Blo01g01626 . . . Bpe02g00316 . . Bma01g02401 . . . . . . . Cpe06g00028 . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00963 . . . . . . . Cmo09g00062 . . . Car09g00053 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005329 1 6 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 3 2 1 40