Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00976 ATGGAGTGGCAGAATCAGCAGCAAAACCAAGCAGAGCAACTGCCAATGCAACTGCCGATTGATCAATTGCAGAACCCAGATGGGTTGTACGTCAAAGTGATGACGGACGAGCAAATGGAGCTTCTCCGGCGACAGATCTCCGTCTACGCTACCATTTGTGAGCAGCTTGTCGAGATGCACAAGGCGATGACTGCCCAACAGGACATAACAGGAATGAGGTTGGGGAATCTCTACTGTGATCCAATGATGGCATCTAGCGGACACAAGATTACTGCTCGACAAAGGTGGACTCCAACTCCCGTGCAGCTTCAGATGCTGGAGCGTATTTTTGACGAAGGAAATGGCACTCCAAGCAAGCAGAAGATTAGAGAGATAACTGTAGAGCTCTCACAACATGGCCAAATCTCCGAAGCAAATGTGTATAATTGGTTCCAAAACAGAAGAGCTCGTTCGAAAAGAAAGCAGTCGGTTTCTATCCAAAACAATGCAGATTCAGAAGTTGAAACCGAAGTCGAATCTCCAAAGGAAGAGAAGACGAAGCTGGTAAGCGCCCGATCATTTGAGAATCTCGGACAGAGTACTGGTGATATTTATAACCAGAAATCAGAGTTAAATGCCAAAATGCAGTACTTGGATGCACAATCGAATAAAGGGGAGCCCCTTTTTCACTTCAGATCTTGTAATTCAGGCCATATGAGTGCCGTGCCGAGTCAAAGTATGTGGACGGATATGACTATCAACAAATTGGAAATTCCGGGTTACAGCTACAATCCTTGTGACGGATATGACCTGATTGAGTGA 801 45.82 MEWQNQQQNQAEQLPMQLPIDQLQNPDGLYVKVMTDEQMELLRRQISVYATICEQLVEMHKAMTAQQDITGMRLGNLYCDPMMASSGHKITARQRWTPTPVQLQMLERIFDEGNGTPSKQKIREITVELSQHGQISEANVYNWFQNRRARSKRKQSVSIQNNADSEVETEVESPKEEKTKLVSARSFENLGQSTGDIYNQKSELNAKMQYLDAQSNKGEPLFHFRSCNSGHMSAVPSQSMWTDMTINKLEIPGYSYNPCDGYDLIE 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9505207 9506969 + Bda005739.1 Bda11g00976 16084

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00976 266 PANTHER - 1 263 - -
Bda11g00976 266 SMART HOX_1 91 158 IPR001356 GO:0003677
Bda11g00976 266 Gene3D - 95 159 - -
Bda11g00976 266 ProSiteProfiles 'Homeobox' domain profile. 89 154 IPR001356 GO:0003677
Bda11g00976 266 MobiDBLite consensus disorder prediction 152 171 - -
Bda11g00976 266 CDD homeodomain 93 155 IPR001356 GO:0003677
Bda11g00976 266 PANTHER WUSCHEL-RELATED HOMEOBOX 13 1 263 IPR044559 GO:0003700
Bda11g00976 266 Pfam Homeodomain 93 153 IPR001356 GO:0003677
Bda11g00976 266 SUPERFAMILY Homeodomain-like 92 157 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00976 - - - bhj:120085747 348.591
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g00324 Bda11g00976 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00976 Bda-Chr11:9505207 Bda11g01811 Bda-Chr11:53266261 4.66E-87 dispersed
Bda11g00976 Bda-Chr11:9505207 Bda03g00324 Bda-Chr3:2762501 2.81E-128 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g82 Blo01g01638 . . Bda03g00324 Bpe02g00305 . Bma04g00291 Bma01g02412 . . Cma01g02023 Cma09g00047 Car01g01590 . . Cpe06g00017 . . . . . . . . . . . . . . . . . . . Lsi04g01814 Csa04g02711 . . . . Bda11g00976 . . . . . Sed01g2425 Cmo01g02079 Cmo09g00049 . . . Car09g00039 . Cpe02g00030 Bhi09g02871 Tan01g5120 Cmetu07g0405 . Hepe01g2347 Mch11g0050 . Cla11g01830 Cam11g1897 Cec11g1922 Cco11g1932 Clacu11g2061 Cmu11g1866 Cre11g2274 . . Chy07g00400 Cme07g00048
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g00976 CCT 1 216 Wox Gene Family AT4G35550 54.5 2.0e-59 226.1
Bda11g01811 . 1 176 Wox Gene Family AT4G35550 61.9 1.7e-53 206.5
Bda03g00324 CCT 30 178 Wox Gene Family AT4G35550 67.8 2.9e-53 205.7
Bda11g00976 CCT 32 170 Wox Gene Family AT1G20700 57.2 8.8e-39 157.1
Bda08g01367 BCT,CCT,ECH 71 217 Wox Gene Family AT1G46480 66.0 1.4e-49 193.0
Bda01g01609 . 1 146 Wox Gene Family AT1G46480 64.6 3.3e-48 188.3
Bda08g01367 BCT,CCT,ECH 71 217 Wox Gene Family AT1G46480 66.0 1.4e-49 193.0
Bda01g01609 . 1 146 Wox Gene Family AT1G46480 64.6 3.3e-48 188.3
Bda11g00976 CCT 1 216 Wox Gene Family AT4G35550 54.5 2.0e-59 226.1
Bda11g01811 . 1 176 Wox Gene Family AT4G35550 61.9 1.7e-53 206.5
Bda03g00324 CCT 30 178 Wox Gene Family AT4G35550 67.8 2.9e-53 205.7
Bda11g00976 CCT 32 170 Wox Gene Family AT1G20700 57.2 8.8e-39 157.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16641 PF00046 Homeodomain 7.80E-18 CL0123 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00976 Bda_Chr11 FPKM 75.133926 74.834015 46.103203 46.194542 48.042473 55.038124 53.443348 58.85527 61.409702