Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00977 ATGGCTGAAACTTGGAATGGGTCGAATGAGCTAGGAAGCCAGACCGACGAGAGTAATTATATTGAGAAGATTCACCTTGAGCCTTTGTATGATTCATTTATCTGCCCTTTGACAAAGCAAGTTATGAGGGATCCCGTCACCTTAGAGAATGGGCAGACATTTGAACGGGAAGCCATTGAAAAATGGTTCAAGCAATACAAAAGTGGGAGGAAGATTGTCTGTCCAGTGACCGGAAAAGAATTAAGAAGCACTGATTTGAACCCAAGTATTGCCCTGCGGAACACCATTGAAGAGTGGAATGCAAGGAATGAAGCCGTGCAGCTAGACATGGCTCGCAAATCCTTAAATCTTGGCAGTGCAGAAAATGACATTATGTACTATTTGAAATATGTCCAGGACGTATGCCAAAAAACTCAAGCAAATAAGTATGTTGTACGAGATGCAGGGCTCATACCTATGATCATTGATTTGTTGAAGAGCATCAGTCAAAATGTTCGTTGCAGAACATTAGAAACTCTCCGTATAGTGGTGGAGGGAGACGATGAAAATAAGGAAGTATTGGCCGAAGGCGACACTGTGAGGACAATAGTGAAATTCTTGTCTCGTGATTTATCTGAGAAGGAGGAGGCTGTCTCTTTGTTGTTTGAGCTCTCTAAATCTAGAGTGCTGTCTGAGAAGATTTGTTCAATAGCTGGAGCAATACTTATTTTAGGTGGAATGACAAACAGCCAATCAGAGAATCTTATAATTGTTGAGAAAGCTGATAGAACATTGGAGAATCTGGAAAAGTGTGAAAATTATGTGCAAGAGTTAGCTCAAAGTGGCAGACTGCAGCCTCTACTCACTCAGATTCTCAAAGGTCCTCCAGAAATCAAAGTCTCCATGGTTGCTTATCTTGGGGAGCAAGTTTTGAATAATGAACAAAAAATCTTTGTGGCTGAAGCTGTGGGGTCGTCTTTGATTAGCATCATAAGAAGCAGTGATATGCAGTCTAGAGAAGCTGCTCTGAAAGCATTAAATCAGATCTCATCTTTCGAGGCGAGTGCGAAAGTGTTGATTGATAAAGGCATACTTCCACCTCTTGTCAAGGGCCTGTTTACGGTTGGATCGAAGCAGCTTCCCATGCGACTGAAGGAGGTTTCAGCAACAATTCTTGCAAATGTTATCAGCTCAGGCAATGACTTCGATTCAATTCCTGTTGGACCTGATCCACGAACTACTTTGGTCTCGGAAGACATAATCCTTAATCTGCTACATCTGATTAGCAACACTGGTCCAGCAATTGAACATAAGCTTCTCCAGGTTCTTGTCGGTCTCACTAATTCACCCTCCACTGTTCTAAATGTTGTTTCTGCCATTAAAAGCTCTGGTGCAACTATCACCTTGATTCAATTCATTGAGGCCCCGCAGCCCGATTTGCGGGTTGCTTCTCTGAAACTCCTGAAAAATATCTCCCCACATATGAGTGAGGAACTGGCGGAATCTTTTCGAGTTGCAGTTGGCCAGCTGAGCAGTCTGTTTAAAATCATATCAGAAAACACTGTAATCACTGAAGAGCAAGCAGCCGCTGTTGCTGTTCTTGCTGACCTCCCTCAAATGGATTTGACCATCACAATGAGAATGCTCGATGAAGGAACCCTCAGGCTGGTTTACTCTAGAGTTGTCGGGATCAGACAAGGGGAGACTAGAGGTGGCCGATATGTGACCCCATTTCTCGAAGCACTTGTTAGAATTCTTGCAAGAGTTACCTTTTTCTTACAAGATGAGCCTTCCACCCTTGCATTTTGTCGTGACTACAATCTCGCTGGACTCTTCATCGAACTGCTTCAATCCAATGGAATCGATGACGTACAAATGACTTCAGCCATAGCCTTGGAGGCCTTATCTCTAGAATCTAAAAAATTGACAAAACTTCCCGAGTTGCCTCCTCCTGGCTTTTGTGGCACAATATTCAGTTGTTTTAGCCCACAGCCTAACTTAACAGGACTGTGCAGAATCCACGGAGGGGCGTGTTCTTTGAAAGAGAGTTTTTGTCTTTTGGAAGGCAAGGCAGTAGAGAAGCTTGTCGCTCTTTTAGACCATGCGAATGTGAAGGTCGTGGAAGCAGCTCTGGCAGCAATTTCTACTTTGCTGGATGATGAGGTTAACATTGAACAAGGAGTGGTAGTGTTGTGTGATGCCGATGGGGTTCAACCTATACTTGACATATTACTTGAGAAAAGGTCAGAGACTCTTAGGAGTAGGGCTGTCTGGACAGTCGAGAGACTTCTTCGAACTGAAGATATTGCATACCAAATTTCTGGAAATCAAATTGTGAATACTGCCCTTGTCGATGCCTTCCATCATGGTGACTATCGAACCCGGCAAATTGCTGAACGTGCTCTAAAGCACGTTGATCGGTTGCCTAATTTCTCCGAAATATTCACCAAAATAGGATAA 2439 43.38 MAETWNGSNELGSQTDESNYIEKIHLEPLYDSFICPLTKQVMRDPVTLENGQTFEREAIEKWFKQYKSGRKIVCPVTGKELRSTDLNPSIALRNTIEEWNARNEAVQLDMARKSLNLGSAENDIMYYLKYVQDVCQKTQANKYVVRDAGLIPMIIDLLKSISQNVRCRTLETLRIVVEGDDENKEVLAEGDTVRTIVKFLSRDLSEKEEAVSLLFELSKSRVLSEKICSIAGAILILGGMTNSQSENLIIVEKADRTLENLEKCENYVQELAQSGRLQPLLTQILKGPPEIKVSMVAYLGEQVLNNEQKIFVAEAVGSSLISIIRSSDMQSREAALKALNQISSFEASAKVLIDKGILPPLVKGLFTVGSKQLPMRLKEVSATILANVISSGNDFDSIPVGPDPRTTLVSEDIILNLLHLISNTGPAIEHKLLQVLVGLTNSPSTVLNVVSAIKSSGATITLIQFIEAPQPDLRVASLKLLKNISPHMSEELAESFRVAVGQLSSLFKIISENTVITEEQAAAVAVLADLPQMDLTITMRMLDEGTLRLVYSRVVGIRQGETRGGRYVTPFLEALVRILARVTFFLQDEPSTLAFCRDYNLAGLFIELLQSNGIDDVQMTSAIALEALSLESKKLTKLPELPPPGFCGTIFSCFSPQPNLTGLCRIHGGACSLKESFCLLEGKAVEKLVALLDHANVKVVEAALAAISTLLDDEVNIEQGVVVLCDADGVQPILDILLEKRSETLRSRAVWTVERLLRTEDIAYQISGNQIVNTALVDAFHHGDYRTRQIAERALKHVDRLPNFSEIFTKIG 812
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9508778 9512018 + Bda005740.1 Bda11g00977 16085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00977 812 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 43 1 809 - -
Bda11g00977 812 Gene3D - 301 485 IPR011989 -
Bda11g00977 812 Gene3D - 571 806 IPR011989 -
Bda11g00977 812 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 110 IPR013083 -
Bda11g00977 812 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 809 - -
Bda11g00977 812 SUPERFAMILY ARM repeat 119 443 IPR016024 -
Bda11g00977 812 SMART arm_5 716 758 IPR000225 GO:0005515
Bda11g00977 812 SMART arm_5 671 712 IPR000225 GO:0005515
Bda11g00977 812 SMART arm_5 180 219 IPR000225 GO:0005515
Bda11g00977 812 SMART arm_5 305 344 IPR000225 GO:0005515
Bda11g00977 812 SMART arm_5 345 390 IPR000225 GO:0005515
Bda11g00977 812 SMART arm_5 138 178 IPR000225 GO:0005515
Bda11g00977 812 Gene3D - 111 247 IPR011989 -
Bda11g00977 812 SUPERFAMILY RING/U-box 23 109 - -
Bda11g00977 812 SMART Ubox_2 32 99 IPR003613 GO:0004842|GO:0016567
Bda11g00977 812 CDD RING-Ubox_PUB 33 79 IPR045210 -
Bda11g00977 812 ProSiteProfiles U-box domain profile. 28 106 IPR003613 GO:0004842|GO:0016567
Bda11g00977 812 Pfam U-box domain 31 104 IPR003613 GO:0004842|GO:0016567
Bda11g00977 812 SUPERFAMILY ARM repeat 456 805 IPR016024 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g01564 Bda11g00977 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01564 Bda-Chr1:51521042 Bda11g00977 Bda-Chr11:9508778 0 dispersed
Bda11g00977 Bda-Chr11:9508778 Bda11g01163 Bda-Chr11:11897568 2.29E-152 dispersed
Bda11g00977 Bda-Chr11:9508778 Bda02g00859 Bda-Chr2:49047415 6.60E-93 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00977 - - pop:7496852 1145.95