Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00980 ATGAGCTTGATTTGGTTTCTGTTGTCATTGTTCCTCAACTTTAAAATGTGGCCTTGCGGATGTAGTAAAAATATTTCTAGCTCTGTGCCATCTGTTGTGAACATTGGAGCTATCTTCTCGTTTGAATCTACCATTGGTAAAGTTGCTAAAATTGCCATGGAGGAAGCTGTAAAAGATGTCAACTCCAACTCCACCATTCTCCATGGCATAAAACTTTCTCTAAGAATGCAAAATTCCAATTGCAGTGGGTTTCTTGGAATGGTTGAAGTTCTTCAATTCATGGAGACGGACAATGTTGCCATTATAGGTCCACAATCTTCTGTGGTTGCTCACATTGTATCCCACGTTGCAAATGAACTTCAAGTTCCTCTTCTTTCATTTGCAGCCACAGACCCAACACTTTCTTCGCTTCAATTTCCATACTTTGTTAGAACTACCCAGAGTGACTTGTTCCAAATGACCGCGGTTGCTGAGATTGTTGATTATTATAATTGGAAAGAAATTATTGCTATTTTTATTGATGATTATTTTGGACGGAATGGGATCGCTGCTTTAGATGATCAACTTGCAGAGAGGCGATGTAAAATATCCTATAAAAAGGGAATCAGCCCTGGTTCTCAAGTCAGTCGAGATGAGATTATTGATTTACTAATTAAAGTTGCAATGATGGAATCTCGAGTTGTTGTTCTCCACGTAAATCCTAGTTCAGGTTTCATGATCTTTTCAGTGGCACAATACCTTGGAATGATGGGTAATGGATATGTCTGGATAGCTACTGATTGGCTCTCATCTGTTTTAGATTCTGCATCTCCTCTCCCTTCTGACATCATGGATTCGATGCAAGGAGTTCTTGCTTTACGCTTACATACTGCAGATTCTGATAGAAAAAGAGAATTTTTGTCCCGGTGGCGCAAGTTAACTGGTGGTTCGTTGGGACTAAATTCTTATGCACTCTATGCTTATGATTCAGTTTGGCTGGCGGCTCATGCTATCGATAACTTTTTGAAGCAGGATGGAGTTATTTCATTTTCCAATGATTCCAGTATACATTCCGGAATGAGTGGCAATCTTAACCTTGAAGCAATGACCATTTTTGATGGTGGACCTGTCCTATTGAAGAACATACTCGAAAGCAATTTCATTGGTTTGACTGGTCCAGTTAAATTCAATTCTGATAGATCACTCGTTTTTCCGGCATATGACATCATTAATGTCATTGGGACCGGATATCGCCGAATTGGATACTGGTCAAACTACACTGGTTTGTCAACAGTTCCTCCAGAGACGCTTTATAATAAGCCACCAAATCGCTCAAGAGCAACGCAGCAGCTCTATGGCGTTGTCTGGCCAGGAGAGACGGTGGCAAAACCCCGTGGATGGGTCTTCCCAAGTAATGGGAAAGAACTAAAAATTGGCGTGCCAAATCGGGTTAGTTACAGAGAATTTGTGTCACAAGTGCGAGGGACTGATGTGTTCAAGGGTTTTTGCATAGATGTCTTTGTAGCTGCTGTAAACCTCCTGCCATATGCTGTTCCGTACCGCTTTATTTCATTCGGGGATGGTAAAAAGAACCCAAGCTACACAGACCTTGTGAGATTGATAACAACAGGCTATTTTGATGCGGCTGTTGGTGACATTGCGATAGTTACTAACCGAACAAAGATTGCGGATTTTACGCAGCCATATGCAGCATCTGGGCTTCTTGTTGTTGCTCCATTCAAAAAACTCAATACTGGTGCCTGGGCTTTCTTACGTCCATTTTCTGCACCTTTGTGGATTGTCACTGCTTGTTTCTTCATTTTCATTGGTATAGCTGTTTGGATAATGGAGCATAGGATAAATGATGAGTTCAGGGGCCCACCTAAAAGACAAATAATAACCATTTTGTGGTTTAGCTTCTCTACCTTGTTTTTTGCCCACAAGGAGAACACCGTGAGCACGCTGGGCCGAATAGTGTTGCTTATTTGGCTCTTTGTTGTTTTGATAATCAATTCCAGCTACACTGCAAGTCTAACGTCAATTCTCACAGTCCAGCAGCTCTCTTCCCCCATTAGAGGAATTGAAAGCTTAAAGGAGGGTGATGAGCCAATAGGATACCAAGTGGGATCTTTTGCCGAGTATTATTTGACCCAGGAGCTCAATATATCTCAATCCAGGCTTATTGCTCTTGGATCACCCGAAGAATATGCCAAGGCTCTGCAGCTTGGCCCTGCCAAGGGAGGAGTTGCTGCCATTGTCGACGAGCGCCCATATTTAGAACTATTCCTTTCAAGCCAATGTAAATACAGAGTTGTTGGTCAAGAGTTCACAAAAAGTGGCTGGGGCTTTGCCTTTCCTCGCGACTCGCCATTGGCTGTGGATATGTCAACTGCAATTTTGCAATTGTCTGAGAATGGCGATCTCCAGAGGATTCATGATAAATGGCTGAAGAAAAGCACTTGCAGCTTAGATACAACTGAAATCGATTCAGACCAGCTTCATCTTCAGAGCTTCTTGGGACTCTTTCTTATTTGTGGTATAGCCTGTTCCATCGCCATCATCATATATTTCATTCAGATTATCAAACAGCTGCGCCACGCTCCACCCCCCGAATCTATTTCTAGCGGTCGGGGTAGTTCACTTTCTGGCCATCTCAGACGGCTTTGGTCAAAATTGGACGAGAAGGAAAGTGATTCCAACAGTCGCGGCAAAAGAAGGAAACTGGAAGGATCTTTACATCGACATGATAATGATGATTTATTTGCCGAAAATTCCACTAGGAGACAGACTCAATCAATTAGCGAGAGTAACTTGTAA 2796 42.31 MSLIWFLLSLFLNFKMWPCGCSKNISSSVPSVVNIGAIFSFESTIGKVAKIAMEEAVKDVNSNSTILHGIKLSLRMQNSNCSGFLGMVEVLQFMETDNVAIIGPQSSVVAHIVSHVANELQVPLLSFAATDPTLSSLQFPYFVRTTQSDLFQMTAVAEIVDYYNWKEIIAIFIDDYFGRNGIAALDDQLAERRCKISYKKGISPGSQVSRDEIIDLLIKVAMMESRVVVLHVNPSSGFMIFSVAQYLGMMGNGYVWIATDWLSSVLDSASPLPSDIMDSMQGVLALRLHTADSDRKREFLSRWRKLTGGSLGLNSYALYAYDSVWLAAHAIDNFLKQDGVISFSNDSSIHSGMSGNLNLEAMTIFDGGPVLLKNILESNFIGLTGPVKFNSDRSLVFPAYDIINVIGTGYRRIGYWSNYTGLSTVPPETLYNKPPNRSRATQQLYGVVWPGETVAKPRGWVFPSNGKELKIGVPNRVSYREFVSQVRGTDVFKGFCIDVFVAAVNLLPYAVPYRFISFGDGKKNPSYTDLVRLITTGYFDAAVGDIAIVTNRTKIADFTQPYAASGLLVVAPFKKLNTGAWAFLRPFSAPLWIVTACFFIFIGIAVWIMEHRINDEFRGPPKRQIITILWFSFSTLFFAHKENTVSTLGRIVLLIWLFVVLIINSSYTASLTSILTVQQLSSPIRGIESLKEGDEPIGYQVGSFAEYYLTQELNISQSRLIALGSPEEYAKALQLGPAKGGVAAIVDERPYLELFLSSQCKYRVVGQEFTKSGWGFAFPRDSPLAVDMSTAILQLSENGDLQRIHDKWLKKSTCSLDTTEIDSDQLHLQSFLGLFLICGIACSIAIIIYFIQIIKQLRHAPPPESISSGRGSSLSGHLRRLWSKLDEKESDSNSRGKRRKLEGSLHRHDNDDLFAENSTRRQTQSISESNL 931
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9538303 9541743 + Bda005744.2 Bda11g00980 16088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00980 931 Gene3D - 148 422 - -
Bda11g00980 931 PANTHER GLUTAMATE RECEPTOR 3.3 22 925 - -
Bda11g00980 931 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 320 332 - -
Bda11g00980 931 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 106 134 - -
Bda11g00980 931 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 46 62 - -
Bda11g00980 931 CDD GluR_Plant 467 809 - -
Bda11g00980 931 CDD PBP1_GABAb_receptor_plant 34 426 IPR044440 -
Bda11g00980 931 SMART GluR_14 470 811 IPR001320 GO:0015276|GO:0016020
Bda11g00980 931 MobiDBLite consensus disorder prediction 886 916 - -
Bda11g00980 931 Pfam Bacterial extracellular solute-binding proteins, family 3 517 810 IPR001638 -
Bda11g00980 931 MobiDBLite consensus disorder prediction 886 931 - -
Bda11g00980 931 Gene3D - 580 721 - -
Bda11g00980 931 Pfam Ligand-gated ion channel 811 842 IPR001320 GO:0015276|GO:0016020
Bda11g00980 931 Gene3D - 51 397 - -
Bda11g00980 931 PIRSF IGluLR_plant 1 930 IPR017103 -
Bda11g00980 931 SUPERFAMILY Periplasmic binding protein-like I 28 460 IPR028082 -
Bda11g00980 931 SUPERFAMILY Periplasmic binding protein-like II 444 812 - -
Bda11g00980 931 Pfam Receptor family ligand binding region 51 407 IPR001828 -
Bda11g00980 931 Gene3D - 759 816 - -
Bda11g00980 931 Gene3D - 463 579 - -
Bda11g00980 931 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 22 925 - -
Bda11g00980 931 MobiDBLite consensus disorder prediction 917 931 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00209 Bda-Chr4:7957263 Bda11g00980 Bda-Chr11:9538303 0 dispersed
Bda06g00363 Bda-Chr6:5826755 Bda11g00980 Bda-Chr11:9538303 0 dispersed
Bda11g00980 Bda-Chr11:9538303 Bda13g00619 Bda-Chr13:7223594 0 dispersed
Bda11g00980 Bda-Chr11:9538303 Bda06g00362 Bda-Chr6:5820368 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00980 K05387 - jre:109011487 1402.88