Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00985 ATGACCCGTCCTCGTAGGGTTCTAGCCGGGGATGCGAATCCCCCTGCGAACGATGACCATCAGCTTCCTTCCGGTCAAAATGACTCAGACGTCGTCATAATACTCGCCGCTCTGCTCTGCGCCTTAATCTGCGTTCTTGGGCTCATAGCCGTAGCTCGTTGTACCTGGATCCGACGCCTATCCGGTAACCGTGCCTTAGCTTCTGCCTCTACCACAGCTAATTCGTCTGGGCCTTCTTCAAACAAAGGGCTTAAGAAGAAAATCTTGAGGTCTCTCCCTAAAGCCACTTTCAACGGTGAGTCCGATTACCAGCTCTCGGATTGCGCGATCTGCCTCACCGAGTTCGCCATTGGCGATGAAATCCGTGTGCTTCCGCAGTGTGGCCATGTTTTCCACCTCTCCTGCATCGATACATGGTTTCGGTCGCACTCATCCTGCCCTTCTTGCCGAAAGGTTCTGGCGGTGTCGAGGTGCCAGAAGTGCGGTGATTTGTCAGCGAGCTCAAGCACTGTTCCAGCAAGTGAAGCCAGATCAAAGGAGAGACAAGATGATGAAAATAGGTTCTTACCCTAG 573 53.05 MTRPRRVLAGDANPPANDDHQLPSGQNDSDVVIILAALLCALICVLGLIAVARCTWIRRLSGNRALASASTTANSSGPSSNKGLKKKILRSLPKATFNGESDYQLSDCAICLTEFAIGDEIRVLPQCGHVFHLSCIDTWFRSHSSCPSCRKVLAVSRCQKCGDLSASSSTVPASEARSKERQDDENRFLP 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9555561 9556133 + Bda005748.1 Bda11g00985 16093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00985 190 SMART ring_2 108 149 IPR001841 -
Bda11g00985 190 Pfam Ring finger domain 107 150 IPR001841 -
Bda11g00985 190 PANTHER RING-H2 FINGER PROTEIN ATL8 1 184 - -
Bda11g00985 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 155 IPR013083 -
Bda11g00985 190 SMART FANCL_C_2 104 158 - -
Bda11g00985 190 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 184 - -
Bda11g00985 190 SUPERFAMILY RING/U-box 91 155 - -
Bda11g00985 190 MobiDBLite consensus disorder prediction 176 190 - -
Bda11g00985 190 MobiDBLite consensus disorder prediction 163 190 - -
Bda11g00985 190 MobiDBLite consensus disorder prediction 1 23 - -
Bda11g00985 190 CDD RING-H2_PA-TM-RING 107 150 - -
Bda11g00985 190 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00985 Bda-Chr11:9555561 Bda11g01372 Bda-Chr11:16639010 3.53E-29 dispersed
Bda04g00171 Bda-Chr4:5101650 Bda11g00985 Bda-Chr11:9555561 6.30E-17 transposed
Bda06g00750 Bda-Chr6:10375028 Bda11g00985 Bda-Chr11:9555561 2.51E-08 transposed
Bda11g01819 Bda-Chr11:53376368 Bda11g00985 Bda-Chr11:9555561 1.57E-17 transposed
Bda14g00192 Bda-Chr14:1369540 Bda11g00985 Bda-Chr11:9555561 2.59E-33 transposed
Bda14g00977 Bda-Chr14:7903613 Bda11g00985 Bda-Chr11:9555561 3.16E-16 transposed
Bda11g00985 Bda-Chr11:9555561 Bda03g00332 Bda-Chr3:2799378 4.31E-94 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00985 - - csv:101207021 220.32