Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00988 ATGCAATCGGAGTCTAGCTCTATGAAGATCTCGCCGCTTGAGCTAATGTCTGCTATGATCAAGGGGACATTGGAGCCATCGAATGGTTCATCGGATGCATTCAGTGAAATTTCCGCAGTTATTTTAGGTAATCGGGAGTTTGTAATGATTTTGACCACGTCGATCGCCGTCCTGGTGGGCTGTGTGGTGTTTTTCTTCTGGAGAAGGTCAAACGTCCACAAATCTAAACCATTGGAGCCACCAAAGCAGTTGATCATCAAGGATCCAGAGCCTGAAGTCGATGACGGTAAGAAGAAAGTTACTATTTTCTTTGGTACGCAGACTGGTACCGCTGAAGGCTTTGCAAAGGCTCTTGCTGAGGAGGCAAAAGCTCGGTATGAGAAGGCGACTTTCAGAGTTGTTGATCTGGCGAGTGATGATTATGCAGCGGATGATGAAGAATATGAGGAGAAATTGAGAAAAGAAACTATCTGTTTGTTCTTCATGGCCACGTATGGAGATGGAGAGCCCACGGATAATGCGGCCAGGTTTTACAAATGGTTCACCGAGGGAAAAGAAAGAGGGGAGTGGCTACAGAGCATTCAGTGTGGGGTTTTTGGCCTTGGCAACCGACAATATGAACATTTCAATAAGGTTCATCATCTTTTCTCAATATATCTTTACTGTGGGAAGCAGCTTGTTCCAGTGGGTTTAGGAGACGATGACCAGTGCATTGAGGATGACTTCACTGCTTGGCGAGAATTATTGTGGCCAGAGCTGGATCAGTTGCTTCGAGATGAAGATGATGCAAGTACTGTTTCTACTCCTTATACTGCAGCTGTACTGGCGTATCGAGTTGAACTTTGTGACCGTTCAATTGGAGAAAAAGAGGAAAAGAGTTGGGTTAACACTAATGGACATGCAGTGCATGATGCTCAACATCCATGCAGGTTGGCTGATGTGGCTGTGAAAAGGGAACTTCATACTCCCTTATCAGACCGATCTTGCACTCATTTGGAATTCGACATTTCCACTACTGGGCTTAAATATGAGACAGGGGATCATGTTGGTGTATACTGTAATAATCTAATGGAAAACGTGGAAGAGGCTTTGGACTTGCTGGGTTTGTCACCTGAAACTTATTTCTCTATTCATACCGATAAAGAGGATGGCACGCCACTTTGTGGGGGCTCCATGCCTGCGCCTTTCCCTCCCTGCACTCTAAGAACTGCATTAACTCGATATGCAGATCTCATAAGTTCACCCAAAAAGTCTGCCTTGCTTGCCCTAGCAGCACATGCGTCTGATCCAACTGAAGCTGATAGATTAAGACATCTTGCATCGCCAGCTGGAAAGGATGAGTATGCACAGTGGGTGATTGCCAGCCAGAGAAGCCTGCTTGAGGTCATGGCTGAGTTTCCATCAGCCAAGCCCCCACTTGGTGTTTTTTTTGCATCAGTTTCCCCACGCTTGCAGCCTAGATATTACTCAATATCATCATCGCCAAGGATGGCTCCGTCCCGAATTCACGTTACTTGTGCACTGGTCTATGATAGAACTCCAACGGGGAGAATCCACAAAGGAATATGTTCTACTTGGATGAAGAATACCATGCCTTTGGAAGAAAGCACTGAATGCAGTTGGGCACCCATATTTGTCAGGCAATCGAATTTCAAGCTCCCTACAAATTCTAAAGTGCCTATCATCATGATTGGTCCTGGCACTGGATTGGCTCCTTTCAGGGGGTTCCTTCAGGAAAGGTTAGCCTTGAAAGCATCGGGCGTGGAACTTGGCCCATCTATTTTATTCTTTGGATGCAGAAATCGCAAAATGGATTACATTTATGAAGAAGAGTTGACCAACTTTGTTCAAGATGGTGCTCTATCTGAGTTAGTAGTTGCCTTCTCCCGAGAGGGACCTGCCAAAGAATATGTTCAGCATAAGATGGCTGAGAAGGCTTCGTACATCTGGAATTCACTATCTCTGGGTGGTTACATATATGTTTGTGGCGATGCCAAAAGCATGGCTAGGGATGTTCATAGAACTCTTCACACCATTGTACAAGAGCAGGGTTCTCTTGACAACTCCAAAGCGGAAAGCATGGTAAAAAATCTGCAAATGACTGGTCGATATTTGCGTGACGTGTGGTGA 2130 45.45 MQSESSSMKISPLELMSAMIKGTLEPSNGSSDAFSEISAVILGNREFVMILTTSIAVLVGCVVFFFWRRSNVHKSKPLEPPKQLIIKDPEPEVDDGKKKVTIFFGTQTGTAEGFAKALAEEAKARYEKATFRVVDLASDDYAADDEEYEEKLRKETICLFFMATYGDGEPTDNAARFYKWFTEGKERGEWLQSIQCGVFGLGNRQYEHFNKVHHLFSIYLYCGKQLVPVGLGDDDQCIEDDFTAWRELLWPELDQLLRDEDDASTVSTPYTAAVLAYRVELCDRSIGEKEEKSWVNTNGHAVHDAQHPCRLADVAVKRELHTPLSDRSCTHLEFDISTTGLKYETGDHVGVYCNNLMENVEEALDLLGLSPETYFSIHTDKEDGTPLCGGSMPAPFPPCTLRTALTRYADLISSPKKSALLALAAHASDPTEADRLRHLASPAGKDEYAQWVIASQRSLLEVMAEFPSAKPPLGVFFASVSPRLQPRYYSISSSPRMAPSRIHVTCALVYDRTPTGRIHKGICSTWMKNTMPLEESTECSWAPIFVRQSNFKLPTNSKVPIIMIGPGTGLAPFRGFLQERLALKASGVELGPSILFFGCRNRKMDYIYEEELTNFVQDGALSELVVAFSREGPAKEYVQHKMAEKASYIWNSLSLGGYIYVCGDAKSMARDVHRTLHTIVQEQGSLDNSKAESMVKNLQMTGRYLRDVW 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9656516 9662180 + Bda007442.1 Bda11g00988 16096

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00988 709 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 591 600 IPR001709 GO:0016491
Bda11g00988 709 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 635 651 IPR001709 GO:0016491
Bda11g00988 709 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 487 494 IPR001709 GO:0016491
Bda11g00988 709 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 521 530 IPR001709 GO:0016491
Bda11g00988 709 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 562 581 IPR001709 GO:0016491
Bda11g00988 709 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 343 353 IPR001709 GO:0016491
Bda11g00988 709 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 658 666 IPR001709 GO:0016491
Bda11g00988 709 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 604 615 IPR001709 GO:0016491
Bda11g00988 709 Pfam Oxidoreductase NAD-binding domain 563 673 IPR001433 GO:0016491
Bda11g00988 709 Gene3D Translation factors 311 552 - -
Bda11g00988 709 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 307 554 IPR017927 GO:0016491
Bda11g00988 709 ProSiteProfiles Flavodoxin-like domain profile. 100 250 IPR008254 GO:0010181
Bda11g00988 709 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 550 709 IPR039261 -
Bda11g00988 709 CDD CYPOR 304 709 - -
Bda11g00988 709 PRINTS Flavodoxin signature 159 170 IPR001094 GO:0010181
Bda11g00988 709 PRINTS Flavodoxin signature 193 203 IPR001094 GO:0010181
Bda11g00988 709 PRINTS Flavodoxin signature 101 114 IPR001094 GO:0010181
Bda11g00988 709 SUPERFAMILY Flavoproteins 91 257 IPR029039 -
Bda11g00988 709 SUPERFAMILY Riboflavin synthase domain-like 302 551 IPR017938 -
Bda11g00988 709 PANTHER NADPH--CYTOCHROME P450 REDUCTASE 26 709 - -
Bda11g00988 709 PANTHER NITRIC OXIDE SYNTHASE-RELATED 26 709 - -
Bda11g00988 709 Pfam Flavodoxin 102 245 IPR008254 GO:0010181
Bda11g00988 709 Gene3D - 353 485 IPR023173 GO:0016491
Bda11g00988 709 Pfam FAD binding domain 306 526 IPR003097 GO:0016491
Bda11g00988 709 Gene3D - 85 268 IPR029039 -
Bda11g00988 709 Gene3D - 553 707 IPR039261 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00988 K00327 POR; NADPH-ferrihemoprotein reductase [EC:1.6.2.4] - pvy:116129421 1140.18
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda09g00966 Bda11g00988 CCT
Bda01g01918 Bda11g00988 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g00961 Bda-Chr9:38558205 Bda11g00988 Bda-Chr11:9656516 0 dispersed
Bda11g00988 Bda-Chr11:9656516 Bda11g01002 Bda-Chr11:9819421 0 dispersed
Bda01g01918 Bda-Chr1:55362536 Bda11g00988 Bda-Chr11:9656516 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g1001 Blo01g00671 . Bda01g01918 Bda11g00988 . Bpe02g02085 Bma07g00697 . Cmo10g00426 . . . Car05g00629 . . Cpe04g01304 Cpe18g00621 . . . . . . . Cla11g01184 Cam11g1242 Cec11g1257 Cco11g1250 Clacu11g1402 Cmu11g1226 Cre11g1647 . . . . Lsi06g01176 Csa02g00634 Chy05g00902 Cme02g01572 Blo08g00470 . . Bda09g00966 Bpe08g00698 Bpe13g01215 Bma01g00373 Bma06g00911 Sed14g1618 . . Cma10g00396 . Car10g00374 . Cpe11g00642 . Bhi06g01258 Tan08g0840 Cmetu07g1756 . Hepe08g2129 . . Cla06g01331 Cam06g1481 Cec06g1537 Cco06g1533 Clacu06g1439 Cmu06g1401 Cre06g2209 . Csa01g02153 Chy02g02228 .
Vvi18g1 . . . . . . Bma04g00311 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1483 . Lsi04g02441 . . . . . Bda11g00988 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001035 5 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 5 4 2 2 2 2 2 3 2 2 4 3 2 81
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00988 Bda_Chr11 FPKM 15.449931 16.826618 0.252942 0.594181 0.435648 0.387953 0.475997 0.0 0.0