Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bda11g01016	ATGACGTTGAGGAAGACGAGTTGTGGATCTGTTTTCTCGATCAGTTGTTACAGAGGAGAGTCTCAGAAGAAGACGAAAAGAGTTGCGGCGGCGAAGGAGGCTTCATTCAAGAGGATTCCGACATTGGATTGGAGCAGTCCGAGCTCTACTCTGTCAGAGGATCTCTCTCTTTCACTCTCTGGGTCTGATATTCAGGTATTCACCCTGGCGGAGATGGCGATGATTACCCAGAATTTCTCGTCGGCTAACTTTCTCGGAGAAGGTGGGTTCGGACCCGTGCTTAAAGGGTTCGTCGATGATAAGCTCCGCCCTGGATTGGCAGCGCAGCCTGTAGCGGTTAAGCTCCTGAATTTGGATGGGTTTCAAGGCCATCGGGAGTGGCTTACAGAAGTAATTTTTCTCGGCCAACTGAGGCATCCACACCTGGTGAAGCTGATCGGATATTGTTGCGAGGAAGAACACAGACTACTCGTTTATGAATACATGCCAAGAGGCAGCCTCGAAAATCAACTGTTTAGAAAATACTCCGTCGCACTGCCATGGTCGACGAGAATGAAGATCGTTCTCGGAGCAGCGAAGGGCCTCGCCTTCCTCCACGAAGCACAAAAACCAGTCATATACAGAGATTTCAAAGCTTCAAACGTCTTGATAGACTCTGACTACCGAGCTAAACTGTCGGATTTTGGGTTGGCGAAAGACGGTCCGGAAGGTGATGACACCCACGTCTCTACTCGAGTCATGGGTACCAACGGTTATGCAGCTCCAGAATATATAATGACCGGGCATTTGACGGCGAAGAGCGACGTGTACAGCTTCGGAGTGGTGCTGTTAGAGTTGCTGACGGGGAGGAGGTCGGTGGACAAGAGCCGTCCTCCAAGAGAGCAGAGCTTGACGGAGTGGGCGAGGCCCATGCTGAAAGACCCGAGGAAGCTGAGCAGGGTGATGGACCAGAGGCTGGAGGGGATGTACTCGGAAACGGGCGCGAGAAAGGCGGCGGCTTTGGCCTATGATTGCCTGTGCCAGCGGCCGAAGCAGAGGCCGACGATGACGGAGGTGAAGGCGGTTCTGGAGGACCTGCAGAATTTCGACGATGTTCCTGTTGGGCAATTTGTGTTCGAGGTTTCGACGGAGATGGAAGTGCAAATGGAAGGTCAAGAACAGAAGAAGAGTAAAGACTAG	1179	52.25	MTLRKTSCGSVFSISCYRGESQKKTKRVAAAKEASFKRIPTLDWSSPSSTLSEDLSLSLSGSDIQVFTLAEMAMITQNFSSANFLGEGGFGPVLKGFVDDKLRPGLAAQPVAVKLLNLDGFQGHREWLTEVIFLGQLRHPHLVKLIGYCCEEEHRLLVYEYMPRGSLENQLFRKYSVALPWSTRMKIVLGAAKGLAFLHEAQKPVIYRDFKASNVLIDSDYRAKLSDFGLAKDGPEGDDTHVSTRVMGTNGYAAPEYIMTGHLTAKSDVYSFGVVLLELLTGRRSVDKSRPPREQSLTEWARPMLKDPRKLSRVMDQRLEGMYSETGARKAAALAYDCLCQRPKQRPTMTEVKAVLEDLQNFDDVPVGQFVFEVSTEMEVQMEGQEQKKSKD	392

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
11	9939038	9940517	-	Bda007475.1	Bda11g01016	16124

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bda11g01016	392	PANTHER	OS01G0588500 PROTEIN-RELATED	25	390	-	-
	Bda11g01016	392	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	205	217	IPR008271	GO:0004672\|GO:0006468
	Bda11g01016	392	ProSiteProfiles	Protein kinase domain profile.	79	362	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bda11g01016	392	Gene3D	Transferase(Phosphotransferase) domain 1	162	369	-	-
	Bda11g01016	392	ProSiteProfiles	Prokaryotic membrane lipoprotein lipid attachment site profile.	1	16	-	-
	Bda11g01016	392	SUPERFAMILY	Protein kinase-like (PK-like)	55	357	IPR011009	-
	Bda11g01016	392	Gene3D	Phosphorylase Kinase; domain 1	55	161	-	-
	Bda11g01016	392	PANTHER	RECEPTOR-LIKE PROTEIN KINASE-RELATED	25	390	-	-
	Bda11g01016	392	Pfam	Protein tyrosine and serine/threonine kinase	83	354	IPR001245	GO:0004672\|GO:0006468
	Bda11g01016	392	CDD	STKc_IRAK	85	359	-	-

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Bda09g01062	Bda11g01016	CCT
	Bda02g00350	Bda11g01016	CCT
	Bda09g01062	Bda11g01016	ECH
	Bda02g00350	Bda11g01016	ECH

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Bda02g00366	Bda-Chr2:44070798	Bda11g01016	Bda-Chr11:9939038	0	dispersed
	Bda11g01016	Bda-Chr11:9939038	Bda11g01235	Bda-Chr11:12856575	1.19E-139	dispersed
	Bda11g01016	Bda-Chr11:9939038	Bda09g01062	Bda-Chr9:40837728	0	transposed

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	69917	PF07714	PK_Tyr_Ser-Thr	4.20E-46	CL0016	Bda	PK

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bda11g01016	-		-	zju:107423923	572.007