Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01020 ATGAGCGGAAAAAGTAGGTTTCCTTTCACCGCCCTTCAATGGCAAGAGCTTGAACACCAAGCTCTAATCTTCAAGTACATGATTTCAGGAATACCCATTCCGCCTGATCTCCTTTTCAGCATTAAAAGAAGCTCCTTTGACTCTCCAGACGGTAGGTTTTTCCTCTCTGGGTTTGTGGGTTCAGGTGGGTGGACTTATTCGCCAATGGGAATGAGGAAGATAGACCCAGAGCCTGGAAGGTGCAGAAGAACAGATGGAAAAAAATGGCGGTGCTCGAAAGAAGCTTACCCAGATTCCAAGTACTGCGAAAGACACATGCATAGAGGCAAAAATCGTTCAAGAAAGCCTGTGGAAGTTTTCAAATCAACACCTGCTTTAAATTCGACGCCATTAACGCCGGCGATCTCTTCTCTCTCTAAGATTTCACCTCCTCTCTCCTCAATCTCCCATTCTCTCTCTCCTTACAGTTCTCATCATCTTTCCCCCTCTTATCATCTTTCTCCTTCTTCACGGCCATCCACTTCCCCTCTTTTAGATTCTGGGTTTTACTCCAATGCCGATCACAGGTATTTTCATGGGATGAAAGAGGTGGACGAGCATCCTTTCTTCTCAGAAGCTCCAACCGGCGCCATTAGAGACTTCTCCGCTTCTGGTTTGGATGAGTACTGGCAACCGAGACCTTCAACGATGAGTTGCTCGTCTTCTTCCTCAAAAGACACCAGTTTCTCTCTCTTGCAGAGCGATTACTCCAGTTTGCAGCTTCAGAGCCTGGACGATTCCACGAAGAACAACAATGATGAACGCATTATTGCATTGGGTAAACGCGAAATGTCCATTCCGACGGAGAGAGAACCGCCGCAGAAGACTGTTCACCGCTTCTTCGACGAGTGGCCGCCGAGAGACCGAGAATCATGGCTGGATTTGGACGGAAAATCATCCAACTCCGGTTTGATTGCCTCATCCAAGCTCTTCCCCCAACACCCTTGA 987 47.72 MSGKSRFPFTALQWQELEHQALIFKYMISGIPIPPDLLFSIKRSSFDSPDGRFFLSGFVGSGGWTYSPMGMRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVFKSTPALNSTPLTPAISSLSKISPPLSSISHSLSPYSSHHLSPSYHLSPSSRPSTSPLLDSGFYSNADHRYFHGMKEVDEHPFFSEAPTGAIRDFSASGLDEYWQPRPSTMSCSSSSSKDTSFSLLQSDYSSLQLQSLDDSTKNNNDERIIALGKREMSIPTEREPPQKTVHRFFDEWPPRDRESWLDLDGKSSNSGLIASSKLFPQHP 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9965409 9966517 + Bda007479.1 Bda11g01020 16128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01020 328 Pfam WRC 76 118 IPR014977 -
Bda11g01020 328 PANTHER GROWTH-REGULATING FACTOR 6 5 314 - -
Bda11g01020 328 MobiDBLite consensus disorder prediction 304 328 - -
Bda11g01020 328 PANTHER - 5 314 IPR031137 GO:0005634|GO:0006351|GO:0032502
Bda11g01020 328 ProSiteProfiles WRC domain profile. 75 119 IPR014977 -
Bda11g01020 328 Pfam QLQ 8 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
Bda11g01020 328 SMART QLQ_2 7 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Bda11g01020 328 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda02g00370 Bda11g01020 CCT
Bda02g00370 Bda11g01020 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00930 Bda-Chr4:59084763 Bda11g01020 Bda-Chr11:9965409 5.97E-54 dispersed
Bda06g00871 Bda-Chr6:11949740 Bda11g01020 Bda-Chr11:9965409 7.26E-64 dispersed
Bda09g01069 Bda-Chr9:41068971 Bda11g01020 Bda-Chr11:9965409 1.37E-15 dispersed
Bda11g01020 Bda-Chr11:9965409 Bda14g01295 Bda-Chr14:14100569 4.85E-34 dispersed
Bda11g01020 Bda-Chr11:9965409 Bda02g00370 Bda-Chr2:44103075 5.67E-97 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16649 PF08879 WRC 6.50E-21 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01020 - - tcc:18588300 302.367