Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01026 ATGCCGGTGCATCTAACTCCTAATTCTATTTCCGCCATCATCGCCGGCGATGTGAATTCGAAGCCGGTCGTTCAGGTTCTGGATATTAAGGCCATCGGTAACGCGCAGGAGAGATACCGGCTCTTAATCTCCGACGCTGTTTCGTCGCAGCACGCTATGCTCGCGACTCAGCTTAATCACTCGGTCAAGAATGGTCTGGTAAAGAAAGGATCTGTCGTCCAATTGATTGAGTACATTTGTAGCCCCGTCCAGAATCGCAAGATTATTATGGTGCTTACCATGGAAACTATAATACTTGATTGCGAGATCATTGGAAATCCAAAATCATTAACATCTGGCGATTCCACTTCTCAGATGTTAACTAATAACAATGTAAAGCAAAGTGTACAGTTGAGTTCCCAAAGATCTGAGCATGATATGCACAACTTTCAGCCAACTGTTCAACCTCCATATCAACCACCTCCAAATTATAGAAACAGAGGTCCTATGATGAAGAATGAAGCACCAGCACGCATCATTCCTATTTCAGCATTAAATCCTTATCAGGGCCGCTGGGCTGTAAAGGCAAGAGTTACTGCAAAAGGTGATCTCCGTCGCTACAATAATTCCCGAGGAGATGGCAAGGTATTTTCATTTGACCTTCTGGACTCTGATGGAGGAGAAATTAGAGTGACCTGTTTCAATGCTGTTGTTGATCGTTTCTATGAGCTTATAGAGGTTGGCAAGGTTTATTTAGTTTCAAAAGGCAATTTGAAGCCCGCCCAGAAGAACTTTAATCATTTGAAGAATGAATGGGAGATATTTTTGGAGGCAACTTCTACCGTGGATCTTTGCCCAGATGAAGATGGCTCTATACCGAGACAACAATTTACTTTCAGACCTATCAGTGAAATTGAGAATGTTGAAAACAATACTATACTTGATGTGATTGGTATTGTGATATCTGTGAACCCTTCGGTTCCTATATTAAGAAAGAATGGTATGGAAACACAGAGAAGAATTCTTAATTTAAAAGATGCATCTGGCAAGATTGTTGAGCTAACCTTGTGGGGAGAATTTTGCAATAGAGAAGGTCAACGACTTCAAGATTTGGTTGATTCTGAGGTTTTTCCAGTTCTAGCTGTCAAAGCTGGGAAGGTAAATGACTTCACTGGTAAATCTATAGGAACTATTTCTGCGACACAGCTCTTTATAAACCCTGATTTTCGAGAGGCTCATATCTTAAGAGATTGGTATGAACATGGAGGTAAGAATGCATCTTCTTTGTCTATTTCTAAAGAAATTATGCCTGGAGGATCTAAGAATGAGATGAGGAAGACTGTATCTCAAATAAAAGATGAAGGTCTTGGAAGATCTGATAAGCCTGACTGGATCACCGTGAAGGCAACCATATCTTTTATTAAAACTGACTCATTCTGTTATACTGCGTGCCCATTGATGATTGGAGATCGACAATGCAGCAAGAAAGTAACAAGGTTAGGAGACGCAAGATGGCAATGCGATCGGTGCAATCAGGACTTCGAGGAGTGTGATTACAGATATCTTCTTCAGACTCAAATTCAAGACCATTCAGGATTGACTTGGGTGACTGCTTTTCAGGAAGCTGGGGAAGAAATATTAGGTGTGTCTGCTAGGGAGTTATACTTGTTGAAGTATGAAGAACAGGATGACACCAAGTTTGGAGAAATAATCCAGCGCAGAATTTTCACCCAATTCATGTTTAGGCTTAAAATCAAAGAGGAGATGTATGGCGATGAACAAAGGATGAAAATTACAGTTGTGAAGGCCGATAAAGTGGACTACCAATCAGAGAGCAAATACATGCTGGATTTTATTTCAAAAATTTCTAGGTGA 1854 40.72 MPVHLTPNSISAIIAGDVNSKPVVQVLDIKAIGNAQERYRLLISDAVSSQHAMLATQLNHSVKNGLVKKGSVVQLIEYICSPVQNRKIIMVLTMETIILDCEIIGNPKSLTSGDSTSQMLTNNNVKQSVQLSSQRSEHDMHNFQPTVQPPYQPPPNYRNRGPMMKNEAPARIIPISALNPYQGRWAVKARVTAKGDLRRYNNSRGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYELIEVGKVYLVSKGNLKPAQKNFNHLKNEWEIFLEATSTVDLCPDEDGSIPRQQFTFRPISEIENVENNTILDVIGIVISVNPSVPILRKNGMETQRRILNLKDASGKIVELTLWGEFCNREGQRLQDLVDSEVFPVLAVKAGKVNDFTGKSIGTISATQLFINPDFREAHILRDWYEHGGKNASSLSISKEIMPGGSKNEMRKTVSQIKDEGLGRSDKPDWITVKATISFIKTDSFCYTACPLMIGDRQCSKKVTRLGDARWQCDRCNQDFEECDYRYLLQTQIQDHSGLTWVTAFQEAGEEILGVSARELYLLKYEEQDDTKFGEIIQRRIFTQFMFRLKIKEEMYGDEQRMKITVVKADKVDYQSESKYMLDFISKISR 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10001285 10003845 + Bda007485.1 Bda11g01026 16134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01026 617 MobiDBLite consensus disorder prediction 130 152 - -
Bda11g01026 617 Pfam Replication factor-A protein 1, N-terminal domain 5 97 IPR007199 GO:0003677|GO:0005634|GO:0006260
Bda11g01026 617 Gene3D - 425 615 IPR012340 -
Bda11g01026 617 PANTHER REPLICATION FACTOR A 1, RFA1 2 612 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bda11g01026 617 CDD RPA1_DBD_B 306 413 - -
Bda11g01026 617 SUPERFAMILY Nucleic acid-binding proteins 438 614 IPR012340 -
Bda11g01026 617 Pfam OB-fold nucleic acid binding domain 186 267 IPR004365 GO:0003676
Bda11g01026 617 SUPERFAMILY Nucleic acid-binding proteins 1 106 IPR012340 -
Bda11g01026 617 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 5 614 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bda11g01026 617 CDD RPA1_DBD_C 441 614 IPR013955 -
Bda11g01026 617 Gene3D - 171 281 IPR012340 -
Bda11g01026 617 Pfam Replication factor-A C terminal domain 457 608 IPR013955 -
Bda11g01026 617 CDD RPA1N 10 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Bda11g01026 617 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 2 612 - -
Bda11g01026 617 CDD RPA1_DBD_A 174 277 - -
Bda11g01026 617 MobiDBLite consensus disorder prediction 130 146 - -
Bda11g01026 617 Pfam Replication protein A OB domain 295 399 IPR031657 -
Bda11g01026 617 Gene3D - 3 111 IPR012340 -
Bda11g01026 617 Gene3D - 284 424 IPR012340 -
Bda11g01026 617 SUPERFAMILY Nucleic acid-binding proteins 171 284 IPR012340 -
Bda11g01026 617 SUPERFAMILY Nucleic acid-binding proteins 290 419 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00521 Bda-Chr6:7478794 Bda11g01026 Bda-Chr11:10001285 4.53E-97 dispersed
Bda11g01026 Bda-Chr11:10001285 Bda15g00624 Bda-Chr15:9395060 3.46E-98 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01026 K07466 - zju:107409151 1010.75