Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda11g01029 | ATGGACGGAGCGGCAGGTTACAACCCCCGAACTGTCGAAGAGGTTTTCAGAGACTTTAGGGGTCGTCGAGCCGGCATGATCAAAGCTCTCACCGCAGACGTAGAAGAATTTTATCAACAGTGCGATCCTGAGAAGGAAAACCTTTGCCTTTATGGACTTCCTAATGAGGAGTGGGAAGTTAATTTGCCAGCTGAAGAAGTGCCCCCCGAGCTGCCGGAGCCTGCATTAGGTATTAACTTTGCTAGAGATGGGATGGAAGAGAAAGACTGGTTGTCCCTGGTTGCTGTTCACAGTGATGCTTGGTTACTTTCAGTGGCTTTCTATTTTGGTTCCAGATTTGGTTTTGATAAAGCTGACAGGAAACGTCTGTTCACTATGATAAATGACGTCCCCACAATATTTGAGATAGTGACTGGAAGTGTGAAGAAACAAGGAAAGGAGAAGTCATCAATTTCAAATCATAGCAGTAATAAATCTAAGTCAGGCTCAAAAGGGAGAGACTCTGAATCTAGCGATGTACCGAAGGAGATGTCGAAAGAAGAGGATGAAGAATTTGAAGAAGAAGAAGAGGAGGAGGAGAACCATGGGGATACCTTATGTGGGGCTTGCAAAGAGAGTTACACATCGGACGAGTTCTGGATTTGCTGTGACATTTGTGAGAAGTGGTTTCATGGCAAGTGCGTGAAGATAACTCCGGCCAGAGCTGAACACATTAAACAATATAAGTGCCCTTCGTGCAGCAACAAGAGAGGTCGACATTGA | 762 | 45.28 | MDGAAGYNPRTVEEVFRDFRGRRAGMIKALTADVEEFYQQCDPEKENLCLYGLPNEEWEVNLPAEEVPPELPEPALGINFARDGMEEKDWLSLVAVHSDAWLLSVAFYFGSRFGFDKADRKRLFTMINDVPTIFEIVTGSVKKQGKEKSSISNHSSNKSKSGSKGRDSESSDVPKEMSKEEDEEFEEEEEEEENHGDTLCGACKESYTSDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRGRH | 253 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 10012004 | 10014597 | - | Bda007488.1 | Bda11g01029 | 16137 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda11g01029 | 253 | Pfam | Alfin | 11 | 138 | IPR021998 | GO:0006355|GO:0042393 | |
| Bda11g01029 | 253 | MobiDBLite | consensus disorder prediction | 145 | 159 | - | - | |
| Bda11g01029 | 253 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 189 | 248 | IPR013083 | - | |
| Bda11g01029 | 253 | CDD | PHD_AL_plant | 199 | 249 | IPR044104 | - | |
| Bda11g01029 | 253 | Coils | Coil | 175 | 195 | - | - | |
| Bda11g01029 | 253 | ProSitePatterns | Zinc finger PHD-type signature. | 200 | 246 | IPR019786 | - | |
| Bda11g01029 | 253 | SUPERFAMILY | FYVE/PHD zinc finger | 188 | 251 | IPR011011 | - | |
| Bda11g01029 | 253 | MobiDBLite | consensus disorder prediction | 179 | 193 | - | - | |
| Bda11g01029 | 253 | PANTHER | CPG BINDING PROTEIN | 4 | 252 | IPR045104 | GO:0006355|GO:0042393 | |
| Bda11g01029 | 253 | Pfam | PHD-finger | 200 | 249 | IPR019787 | - | |
| Bda11g01029 | 253 | SMART | PHD_3 | 199 | 247 | IPR001965 | - | |
| Bda11g01029 | 253 | MobiDBLite | consensus disorder prediction | 145 | 193 | - | - | |
| Bda11g01029 | 253 | ProSiteProfiles | Zinc finger PHD-type profile. | 197 | 249 | IPR019787 | - | |
| Bda11g01029 | 253 | MobiDBLite | consensus disorder prediction | 160 | 178 | - | - | |
| Bda11g01029 | 253 | PANTHER | PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 | 4 | 252 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bda02g00379 | Bda11g01029 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda02g00379 | Bda-Chr2:44172210 | Bda11g01029 | Bda-Chr11:10012004 | 4.78E-117 | dispersed | |
| Bda11g01029 | Bda-Chr11:10012004 | Bda13g01589 | Bda-Chr13:39420346 | 1.63E-127 | dispersed | |
| Bda01g01999 | Bda-Chr1:56332600 | Bda11g01029 | Bda-Chr11:10012004 | 9.40E-134 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 16652 | PF12165 | Alfin | 3.70E-69 | No_clan | Bda | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda11g01029 | - | - | pvy:116146748 | 410.994 |