Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01029 ATGGACGGAGCGGCAGGTTACAACCCCCGAACTGTCGAAGAGGTTTTCAGAGACTTTAGGGGTCGTCGAGCCGGCATGATCAAAGCTCTCACCGCAGACGTAGAAGAATTTTATCAACAGTGCGATCCTGAGAAGGAAAACCTTTGCCTTTATGGACTTCCTAATGAGGAGTGGGAAGTTAATTTGCCAGCTGAAGAAGTGCCCCCCGAGCTGCCGGAGCCTGCATTAGGTATTAACTTTGCTAGAGATGGGATGGAAGAGAAAGACTGGTTGTCCCTGGTTGCTGTTCACAGTGATGCTTGGTTACTTTCAGTGGCTTTCTATTTTGGTTCCAGATTTGGTTTTGATAAAGCTGACAGGAAACGTCTGTTCACTATGATAAATGACGTCCCCACAATATTTGAGATAGTGACTGGAAGTGTGAAGAAACAAGGAAAGGAGAAGTCATCAATTTCAAATCATAGCAGTAATAAATCTAAGTCAGGCTCAAAAGGGAGAGACTCTGAATCTAGCGATGTACCGAAGGAGATGTCGAAAGAAGAGGATGAAGAATTTGAAGAAGAAGAAGAGGAGGAGGAGAACCATGGGGATACCTTATGTGGGGCTTGCAAAGAGAGTTACACATCGGACGAGTTCTGGATTTGCTGTGACATTTGTGAGAAGTGGTTTCATGGCAAGTGCGTGAAGATAACTCCGGCCAGAGCTGAACACATTAAACAATATAAGTGCCCTTCGTGCAGCAACAAGAGAGGTCGACATTGA 762 45.28 MDGAAGYNPRTVEEVFRDFRGRRAGMIKALTADVEEFYQQCDPEKENLCLYGLPNEEWEVNLPAEEVPPELPEPALGINFARDGMEEKDWLSLVAVHSDAWLLSVAFYFGSRFGFDKADRKRLFTMINDVPTIFEIVTGSVKKQGKEKSSISNHSSNKSKSGSKGRDSESSDVPKEMSKEEDEEFEEEEEEEENHGDTLCGACKESYTSDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRGRH 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10012004 10014597 - Bda007488.1 Bda11g01029 16137

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01029 253 Pfam Alfin 11 138 IPR021998 GO:0006355|GO:0042393
Bda11g01029 253 MobiDBLite consensus disorder prediction 145 159 - -
Bda11g01029 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 248 IPR013083 -
Bda11g01029 253 CDD PHD_AL_plant 199 249 IPR044104 -
Bda11g01029 253 Coils Coil 175 195 - -
Bda11g01029 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Bda11g01029 253 SUPERFAMILY FYVE/PHD zinc finger 188 251 IPR011011 -
Bda11g01029 253 MobiDBLite consensus disorder prediction 179 193 - -
Bda11g01029 253 PANTHER CPG BINDING PROTEIN 4 252 IPR045104 GO:0006355|GO:0042393
Bda11g01029 253 Pfam PHD-finger 200 249 IPR019787 -
Bda11g01029 253 SMART PHD_3 199 247 IPR001965 -
Bda11g01029 253 MobiDBLite consensus disorder prediction 145 193 - -
Bda11g01029 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Bda11g01029 253 MobiDBLite consensus disorder prediction 160 178 - -
Bda11g01029 253 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 4 252 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01029 - - - pvy:116146748 410.994
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda02g00379 Bda11g01029 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00379 Bda-Chr2:44172210 Bda11g01029 Bda-Chr11:10012004 4.78E-117 dispersed
Bda11g01029 Bda-Chr11:10012004 Bda13g01589 Bda-Chr13:39420346 1.63E-127 dispersed
Bda01g01999 Bda-Chr1:56332600 Bda11g01029 Bda-Chr11:10012004 9.40E-134 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g114 . . . Bda11g01029 Bpe01g00604 . . Bma11g00599 . . . . . . . . . . . . . . . . Cla11g00146 Cam11g0168 Cec11g0170 Cco11g0181 Clacu11g0303 Cmu11g0156 Cre11g0655 . . . Cone7ag0758 . . . . . . Bda02g00379 . . . Bma01g00252 . . . . . . . . . . Bhi06g01609 . . . . . . Cla03g01469 Cam03g1545 Cec03g1587 Cco03g1580 Clacu03g1569 Cmu03g2125 Cre03g1798 Lsi11g00171 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda08g00428 BCT 1 252 Alfin-like Transcription Factor Family AT1G14510 82.5 4.7e-114 407.5
Bda06g00180 BCT 1 250 Alfin-like Transcription Factor Family AT1G14510 85.2 1.8e-113 405.6
Bda01g01999 . 1 249 Alfin-like Transcription Factor Family AT1G14510 74.3 2.6e-96 348.6
Bda13g01589 . 4 250 Alfin-like Transcription Factor Family AT1G14510 68.3 2.8e-95 345.1
Bda11g01029 CCT 1 250 Alfin-like Transcription Factor Family AT1G14510 73.3 4.8e-95 344.4
Bda02g00379 CCT 9 261 Alfin-like Transcription Factor Family AT1G14510 65.4 1.2e-85 313.2
Bda15g00255 . 8 238 Alfin-like Transcription Factor Family AT1G14510 60.7 9.8e-80 293.5
Bda03g00819 . 7 250 Alfin-like Transcription Factor Family AT1G14510 58.2 5.0e-76 281.2
Bda14g00249 . 8 238 Alfin-like Transcription Factor Family AT1G14510 56.3 3.7e-71 265.0
Bda01g00163 . 1 195 Alfin-like Transcription Factor Family AT1G14510 50.2 2.1e-45 179.5
Bda01g01999 . 1 251 Alfin-like Transcription Factor Family AT5G26210 77.2 3.6e-106 381.3
Bda11g01029 CCT 1 252 Alfin-like Transcription Factor Family AT5G26210 76.4 4.0e-105 377.9
Bda13g01589 . 4 253 Alfin-like Transcription Factor Family AT5G26210 71.0 3.4e-104 374.8
Bda06g00180 BCT 9 252 Alfin-like Transcription Factor Family AT5G26210 75.2 6.4e-95 344.0
Bda02g00379 CCT 1 262 Alfin-like Transcription Factor Family AT5G26210 70.6 1.9e-94 342.4
Bda08g00428 BCT 9 254 Alfin-like Transcription Factor Family AT5G26210 71.3 2.7e-93 338.6
Bda03g00819 . 4 252 Alfin-like Transcription Factor Family AT5G26210 57.3 2.0e-80 295.8
Bda15g00255 . 7 240 Alfin-like Transcription Factor Family AT5G26210 57.1 3.4e-80 295.0
Bda14g00249 . 7 238 Alfin-like Transcription Factor Family AT5G26210 54.1 1.1e-70 263.5
Bda01g00163 . 1 197 Alfin-like Transcription Factor Family AT5G26210 50.2 2.6e-48 189.1
Bda01g01999 . 3 251 Alfin-like Transcription Factor Family AT3G42790 77.5 1.2e-101 366.3
Bda11g01029 CCT 3 252 Alfin-like Transcription Factor Family AT3G42790 76.8 1.7e-100 362.5
Bda13g01589 . 6 252 Alfin-like Transcription Factor Family AT3G42790 68.1 4.8e-95 344.4
Bda06g00180 BCT 9 252 Alfin-like Transcription Factor Family AT3G42790 72.5 5.9e-93 337.4
Bda08g00428 BCT 9 254 Alfin-like Transcription Factor Family AT3G42790 69.5 5.0e-92 334.3
Bda02g00379 CCT 1 262 Alfin-like Transcription Factor Family AT3G42790 68.8 1.3e-87 319.7
Bda15g00255 . 7 240 Alfin-like Transcription Factor Family AT3G42790 58.5 9.7e-80 293.5
Bda03g00819 . 6 252 Alfin-like Transcription Factor Family AT3G42790 55.8 1.6e-77 286.2
Bda14g00249 . 7 238 Alfin-like Transcription Factor Family AT3G42790 54.4 7.0e-70 260.8
Bda15g00255 . 1 240 Alfin-like Transcription Factor Family AT5G05610 79.3 4.9e-113 404.1
Bda03g00819 . 4 253 Alfin-like Transcription Factor Family AT5G05610 70.9 9.3e-104 373.2
Bda14g00249 . 1 241 Alfin-like Transcription Factor Family AT5G05610 74.1 3.0e-102 368.2
Bda13g01589 . 11 252 Alfin-like Transcription Factor Family AT5G05610 66.4 7.6e-90 327.0
Bda01g01999 . 4 251 Alfin-like Transcription Factor Family AT5G05610 63.5 1.1e-88 323.2
Bda11g01029 CCT 4 252 Alfin-like Transcription Factor Family AT5G05610 61.2 7.9e-87 317.0
Bda08g00428 BCT 9 254 Alfin-like Transcription Factor Family AT5G05610 64.9 1.5e-85 312.8
Bda06g00180 BCT 9 252 Alfin-like Transcription Factor Family AT5G05610 61.0 6.3e-84 307.4
Bda02g00379 CCT 6 262 Alfin-like Transcription Factor Family AT5G05610 55.8 1.4e-78 289.7
Bda01g00163 . 1 198 Alfin-like Transcription Factor Family AT5G05610 63.6 2.5e-64 242.3
Bda15g00255 . 43 240 Alfin-like Transcription Factor Family AT3G11200 82.1 1.5e-95 345.9
Bda14g00249 . 45 241 Alfin-like Transcription Factor Family AT3G11200 77.0 3.3e-90 328.2
Bda03g00819 . 42 253 Alfin-like Transcription Factor Family AT3G11200 72.7 8.5e-86 313.5
Bda01g01999 . 44 251 Alfin-like Transcription Factor Family AT3G11200 65.1 4.1e-72 268.1
Bda13g01589 . 47 252 Alfin-like Transcription Factor Family AT3G11200 62.6 1.2e-71 266.5
Bda11g01029 CCT 44 252 Alfin-like Transcription Factor Family AT3G11200 63.5 2.0e-71 265.8
Bda08g00428 BCT 44 254 Alfin-like Transcription Factor Family AT3G11200 64.0 1.7e-70 262.7
Bda06g00180 BCT 44 252 Alfin-like Transcription Factor Family AT3G11200 64.6 8.5e-70 260.4
Bda01g00163 . 1 198 Alfin-like Transcription Factor Family AT3G11200 62.2 1.3e-62 236.5
Bda02g00379 CCT 44 262 Alfin-like Transcription Factor Family AT3G11200 56.8 6.5e-62 234.2
Bda08g00428 BCT 1 161 Alfin-like Transcription Factor Family AT2G02470 85.7 4.6e-77 284.6
Bda06g00180 BCT 1 161 Alfin-like Transcription Factor Family AT2G02470 86.3 7.9e-77 283.9
Bda01g01999 . 1 158 Alfin-like Transcription Factor Family AT2G02470 76.6 1.1e-65 246.9
Bda11g01029 CCT 1 164 Alfin-like Transcription Factor Family AT2G02470 72.6 5.3e-65 244.6
Bda02g00379 CCT 1 164 Alfin-like Transcription Factor Family AT2G02470 73.8 7.6e-64 240.7
Bda13g01589 . 4 161 Alfin-like Transcription Factor Family AT2G02470 74.1 1.9e-62 236.1
Bda15g00255 . 8 153 Alfin-like Transcription Factor Family AT2G02470 67.1 7.2e-54 207.6
Bda03g00819 . 7 154 Alfin-like Transcription Factor Family AT2G02470 65.6 1.8e-52 203.0
Bda14g00249 . 8 153 Alfin-like Transcription Factor Family AT2G02470 63.1 6.5e-47 184.5
Bda11g01029 CCT 3 164 Alfin-like Transcription Factor Family AT5G20510 78.4 1.1e-72 269.6
Bda01g01999 . 3 167 Alfin-like Transcription Factor Family AT5G20510 77.6 1.5e-72 269.2
Bda02g00379 CCT 1 164 Alfin-like Transcription Factor Family AT5G20510 75.2 5.3e-70 260.8
Bda13g01589 . 6 167 Alfin-like Transcription Factor Family AT5G20510 72.2 9.4e-67 250.0
Bda08g00428 BCT 3 164 Alfin-like Transcription Factor Family AT5G20510 73.2 4.7e-66 247.7
Bda06g00180 BCT 3 165 Alfin-like Transcription Factor Family AT5G20510 72.7 5.1e-65 244.2
Bda15g00255 . 7 157 Alfin-like Transcription Factor Family AT5G20510 62.7 7.7e-53 203.8
Bda03g00819 . 6 156 Alfin-like Transcription Factor Family AT5G20510 61.8 2.9e-52 201.8
Bda14g00249 . 7 136 Alfin-like Transcription Factor Family AT5G20510 65.2 5.9e-45 177.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16652 PF12165 Alfin 3.70E-69 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01029 Bda_Chr11 FPKM 0.234968 0.178091 1.559322 1.951397 0.836407 0.842436 0.976898 1.899113 1.509237