Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01029 ATGGACGGAGCGGCAGGTTACAACCCCCGAACTGTCGAAGAGGTTTTCAGAGACTTTAGGGGTCGTCGAGCCGGCATGATCAAAGCTCTCACCGCAGACGTAGAAGAATTTTATCAACAGTGCGATCCTGAGAAGGAAAACCTTTGCCTTTATGGACTTCCTAATGAGGAGTGGGAAGTTAATTTGCCAGCTGAAGAAGTGCCCCCCGAGCTGCCGGAGCCTGCATTAGGTATTAACTTTGCTAGAGATGGGATGGAAGAGAAAGACTGGTTGTCCCTGGTTGCTGTTCACAGTGATGCTTGGTTACTTTCAGTGGCTTTCTATTTTGGTTCCAGATTTGGTTTTGATAAAGCTGACAGGAAACGTCTGTTCACTATGATAAATGACGTCCCCACAATATTTGAGATAGTGACTGGAAGTGTGAAGAAACAAGGAAAGGAGAAGTCATCAATTTCAAATCATAGCAGTAATAAATCTAAGTCAGGCTCAAAAGGGAGAGACTCTGAATCTAGCGATGTACCGAAGGAGATGTCGAAAGAAGAGGATGAAGAATTTGAAGAAGAAGAAGAGGAGGAGGAGAACCATGGGGATACCTTATGTGGGGCTTGCAAAGAGAGTTACACATCGGACGAGTTCTGGATTTGCTGTGACATTTGTGAGAAGTGGTTTCATGGCAAGTGCGTGAAGATAACTCCGGCCAGAGCTGAACACATTAAACAATATAAGTGCCCTTCGTGCAGCAACAAGAGAGGTCGACATTGA 762 45.28 MDGAAGYNPRTVEEVFRDFRGRRAGMIKALTADVEEFYQQCDPEKENLCLYGLPNEEWEVNLPAEEVPPELPEPALGINFARDGMEEKDWLSLVAVHSDAWLLSVAFYFGSRFGFDKADRKRLFTMINDVPTIFEIVTGSVKKQGKEKSSISNHSSNKSKSGSKGRDSESSDVPKEMSKEEDEEFEEEEEEEENHGDTLCGACKESYTSDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRGRH 253
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 10012004 10014597 - Bda007488.1 Bda11g01029 16137
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01029 253 Pfam Alfin 11 138 IPR021998 GO:0006355|GO:0042393
Bda11g01029 253 MobiDBLite consensus disorder prediction 145 159 - -
Bda11g01029 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 248 IPR013083 -
Bda11g01029 253 CDD PHD_AL_plant 199 249 IPR044104 -
Bda11g01029 253 Coils Coil 175 195 - -
Bda11g01029 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Bda11g01029 253 SUPERFAMILY FYVE/PHD zinc finger 188 251 IPR011011 -
Bda11g01029 253 MobiDBLite consensus disorder prediction 179 193 - -
Bda11g01029 253 PANTHER CPG BINDING PROTEIN 4 252 IPR045104 GO:0006355|GO:0042393
Bda11g01029 253 Pfam PHD-finger 200 249 IPR019787 -
Bda11g01029 253 SMART PHD_3 199 247 IPR001965 -
Bda11g01029 253 MobiDBLite consensus disorder prediction 145 193 - -
Bda11g01029 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Bda11g01029 253 MobiDBLite consensus disorder prediction 160 178 - -
Bda11g01029 253 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 4 252 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Bda02g00379 Bda11g01029 CCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00379 Bda-Chr2:44172210 Bda11g01029 Bda-Chr11:10012004 4.78E-117 dispersed
Bda11g01029 Bda-Chr11:10012004 Bda13g01589 Bda-Chr13:39420346 1.63E-127 dispersed
Bda01g01999 Bda-Chr1:56332600 Bda11g01029 Bda-Chr11:10012004 9.40E-134 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16652 PF12165 Alfin 3.70E-69 No_clan Bda TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01029 - - pvy:116146748 410.994