Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01036 ATGTATTTCTGCAGAACTAATAGTGGTACATTCATGGACGGTGATCTTCGCATCAATCGGGAGGGAGTTCAAATTGTCTGTCAGACTCAGAAAGAAGCTGAAAATTCATGTCAACTCAACCCTTCAGACAGCCAGTGGAGTTTGGAAGACATGGATACAGTTAAAGTCATCGGAAAAGGTAACGGCGGAGTTGTTCAGTTGGTGAAGCACAAAGCCACCGGCCAATTTTTCGCATTGAAGGTTATTCAAATGAAGATCGAGGAGAGTTATCGGAAACAGATAGCGAGGGAACTGAAAATTAATCAGTCAGCTCGAAGCCCTTATGTGGTGGTCTGTTATCAGTCTTTCTACTACAATGGAGCCATTTCAATTATCTTAGAGTACATGGATGGAGGGAGTCTAGCAGATTTTCTGAAACAAGTTAAGTCGATTCCTGAGGAATATCTTGCTGCAATATGTAAACAGGTGCTGAGGGGACTTTTGTACCTTCACCATGAAATGCACATAATTCACAGGGACTTGAAGCCTTCAAATCTGCTAATAAATCACAAAGGAGAAGTCAAGATTAGTGATTTTGGTGTGAGCAGAATAATGGCAAGCACCTCTGGACAGGCAAATACCTTTCTTGGAACATGCAACTACATGTCTCCAGAGAGGATTGGTGGAGAAAGATATGACAAGAAAAGTGACATTTGGAGCCTGGGACTGGTTTTACTGGAGTGTGCAATTGGTCAGTTTCCTTATTCTCCACCAGAGGAAGGTGGAAGCTTGGATAACTTCTTTGATATTATGCAAGTCATTGTTAATGGACCTCCTCCTTCTGCTCCTTCTCCCAGATTTTCTCCGCAGTTCTGCTCCTTCATTTCTGCATGCTTAGAAAAAGAGCCGAAAGATAGACTCTCGGCTCGTGAGCTTATGGTGCATCCTTTTGTGAATGCATATGAAGACTTGGATGTGGATCTATCATCATACTTTGCAGACGCCGGATCTCCATTTCCACCCTCTTAG 1008 42.86 MYFCRTNSGTFMDGDLRINREGVQIVCQTQKEAENSCQLNPSDSQWSLEDMDTVKVIGKGNGGVVQLVKHKATGQFFALKVIQMKIEESYRKQIARELKINQSARSPYVVVCYQSFYYNGAISIILEYMDGGSLADFLKQVKSIPEEYLAAICKQVLRGLLYLHHEMHIIHRDLKPSNLLINHKGEVKISDFGVSRIMASTSGQANTFLGTCNYMSPERIGGERYDKKSDIWSLGLVLLECAIGQFPYSPPEEGGSLDNFFDIMQVIVNGPPPSAPSPRFSPQFCSFISACLEKEPKDRLSARELMVHPFVNAYEDLDVDLSSYFADAGSPFPPS 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10100335 10103285 + Bda007499.1 Bda11g01036 16144

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01036 335 Gene3D Phosphorylase Kinase; domain 1 20 130 - -
Bda11g01036 335 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 5 330 - -
Bda11g01036 335 Gene3D Transferase(Phosphotransferase) domain 1 131 330 - -
Bda11g01036 335 SUPERFAMILY Protein kinase-like (PK-like) 44 316 IPR011009 -
Bda11g01036 335 CDD PKc_MAPKK_plant_like 49 315 - -
Bda11g01036 335 ProSiteProfiles Protein kinase domain profile. 51 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda11g01036 335 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Bda11g01036 335 PANTHER MAP KINASE KINASE 5 330 - -
Bda11g01036 335 SMART serkin_6 51 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda11g01036 335 Pfam Protein kinase domain 53 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda11g01036 335 ProSitePatterns Protein kinases ATP-binding region signature. 57 80 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01036 K20603 MKK2; mitogen-activated protein kinase kinase 2 [EC:2.7.12.2] - cit:102625262 489.189
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda02g00383 Bda11g01036 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02038 Bda-Chr1:56647120 Bda11g01036 Bda-Chr11:10100335 1.86E-142 dispersed
Bda07g01729 Bda-Chr7:32401743 Bda11g01036 Bda-Chr11:10100335 6.07E-72 dispersed
Bda11g01036 Bda-Chr11:10100335 Bda11g01809 Bda-Chr11:53177394 3.47E-69 dispersed
Bda11g01036 Bda-Chr11:10100335 Bda02g00383 Bda-Chr2:44203814 8.61E-168 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g140 . Blo16g00976 . Bda11g01036 Bpe01g00601 . . Bma11g00589 Cmo10g00767 Cmo11g00726 . . . . Sed08g0891 Cpe04g01040 Cpe18g00340 Bhi02g01848 Tan09g1114 Cmetu09g0930 . . . . Cla11g00151 Cam11g0173 Cec11g0175 Cco11g0187 Clacu11g0310 Cmu11g0162 Cre11g0661 . . . Cone7ag0750 Lsi06g00302 Csa02g00036 Chy05g01452 Cme02g00272 . Blo14g00559 Bda02g00383 . . Bpe13g01246 . . Sed05g1512 . . Cma10g00741 Cma11g00712 Car10g00666 Car11g00592 . . Bhi06g01629 Tan08g0048 Cmetu04g1006 . Hepe08g2677 . . Cla03g01476 Cam03g1552 Cec03g1594 Cco03g1588 Clacu03g1576 Cmu03g2132 Cre03g1805 Lsi11g00177 Csa01g02954 Chy02g01249 Cme05g02055
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda02g00383 CCT 27 338 MAP Kinase Kinase Gene Family AT4G26070 66.1 2.0e-123 439.1
Bda11g01036 CCT 3 334 MAP Kinase Kinase Gene Family AT4G26070 61.7 1.0e-119 426.8
Bda01g02038 . 4 340 MAP Kinase Kinase Gene Family AT4G26070 55.0 2.9e-103 372.1
Bda02g00383 CCT 1 312 MAP Kinase Kinase Gene Family AT4G29810 65.8 1.2e-125 446.4
Bda11g01036 CCT 4 307 MAP Kinase Kinase Gene Family AT4G29810 66.1 8.7e-116 413.7
Bda01g02038 . 5 314 MAP Kinase Kinase Gene Family AT4G29810 59.0 1.9e-102 369.4
Bda07g01729 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 77.4 6.2e-227 783.5
Bda11g01809 . 5 314 MAP Kinase Kinase Gene Family AT1G51660 52.0 7.8e-86 314.3
Bda11g01809 . 43 312 MAP Kinase Kinase Gene Family AT3G21220 56.3 1.1e-84 310.5
Bda01g02038 . 3 344 MAP Kinase Kinase Gene Family AT5G56580 82.5 2.2e-157 552.0
Bda11g01036 CCT 6 322 MAP Kinase Kinase Gene Family AT5G56580 59.6 4.1e-108 388.3
Bda02g00383 CCT 7 327 MAP Kinase Kinase Gene Family AT5G56580 57.0 2.7e-107 385.6
Bda11g01809 . 1 310 MAP Kinase Kinase Gene Family AT1G18350 62.6 1.9e-109 392.5
Bda11g01809 . 1 313 MAP Kinase Kinase Gene Family AT1G73500 65.5 8.5e-118 420.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001594 2 3 1 2 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 2 2 9 2 1 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69918 PF00069 Pkinase 2.20E-70 CL0016 Bda PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01036 Bda_Chr11 FPKM 0.760218 0.0 0.6261 0.704843 0.227121 0.536446 0.0 7.250476 7.443285