Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01037 ATGGTGGCAGTTAACGGCGTTCCCGGCCGTAGCAGTGGCGGCGGAAGCCGACGCGCGGTCCAATGGGCCGTGGAGAATCTCTTGCCCGGTGCTGGTCGTCTCCTCTTAGTTCATGTCATGCCCAAAATTACTTCGATTCCCACTCCATTGGGAGATGGAGTCCCCGTTACGGCTCTTGATGCGAACGTGGTTGCACTTTATACGCAAGACATGAAAGAGAAATTCGATCAAATTTTTGTCCCGTTTAAGAAGCTTTGCTGGGAAAACAAAGTTGAAACTCTGGTGCTTGAAGATGACAACCCAGCTACAGCGCTTGTAAGATATATATCTGAGTCTGATATCAAAACATTGGTGTTGGGTTCTTGTTCTTCAAATTTCATGACAAGGAAGCTTAAAGGACCTGGAGTACCAACTACAGTTCTGAGAAATGCTCCAAATAGTTGTAATATCTTCATTATATCAAAGCGTAGAATCATTACAAGAACCACAAGTTCCTCGCCAACCAGTGAGACCGATTCTCGGCAGTGCATACCAAGTGAAAGTAACTACGAAGAAGGTGCTGATAGGTTCTGTTCTTCATCTGCAGAATCAGAGGGCAGTAGCAGAACTGTATATTCAGAAAGGATTCATGATGACTTGGAAAACAAACAAGAGATTGATTCAAGTAAATTAGGTTTCGCAGCCTCCGAAACTGAGCAGGTAGATATGCAGCGTGAGATTGAGTCACTGCAGCTAGATTTAGAAAACACTGTTGCCATGTATAAACGTGCTTGTGAAGAACTGGTCCATACCCAGAATAAGGTGCAGTCACTTTCCTCTGAATGGCATGAAGAAACAAGAAGAACGAAATCTGCCATGGAAAGAGAAGAAGATTCAAGGAAAATTGCTGCTGAAGAAAAAGCTAAGCATTTAGAAGCCATGAAGGCACTAGAGGAAGCAAAAGCTTTACTGGCTAAAGAGGCATATGAAAGGCAGTTGGCCGAACAGAATGCCCTAAAAATATCCTTGGAAAAGCAAAGAATTGTTGATACTCTGATCTCTTCTGATAAAAGGTACAGAAGGTATACTGGGGAGGAAATAGAAATTGCAACGGATTTCTTCAGCGAGAGTAATATGATTGGTCAGGGAGGATATGGGAAGGTTTATAAATGCTATCTTGATGGTACACTAGTGGCTGTTAAGGTTCTTCAACCTGGTGAATTTGACAAGAAAAATGAGTTTCTGAAAGAGGTTGAAGTTTTAAGCCAAATACGCCATCCACACGTGGTTTTACTCCTCGGAGCTTGTCCAGAGAGAGGTTGTCTGGTTTATGAATTCTTGGAAAATGGAAGTCTGGACGAGTATATCTTACAGCAGAGGAGGAAACCACCACTGCCATGGCTTGTTAGATTCAGGATAATTCATCAAGTAGCTTGTGGACTTTCTTTCTTACACAACTCGAAGCCGGAACCTATAATACATCGAGATCTAAAGCCGGGCAATATCTTGTTGGACAGAAACTATGTTGTCAAAATTGCAGATGTTGGACTGGCTAAAATCACTGGAGATATAGTGCCTGATAATATAACAGAGTATAAAAATTCTATTATATTTGGTACACTTCACTACATGGACCCCGAGTATCAGAGAACTGGCACGGTTCGTCCAAAATCTGATTTATATGCTTTTGGTGTAATAGTTCTCCAAATGCTGACAGGCCGTCGTCCTCACGGCTTAATTTTAGCAGTAGAGAATGCTATTTCAAGTGGGTCCCTGGCAGATATTTTAGATAAGTCAGTTTCAGATTGGCCTCTTTCTGAAACAGAAGAATTGGCCAAAATTGCTCTGGGATGCACAAAGCTTAGATGCAGGGATCGGCCTGATTTGGACGCAGAGGTTATGCCCATCCTCAATACAATTTTGAACGTTGCAGAGTTTAGTCAGAAAATTCTCGGATATGTCCCAAGCCACTACCTCTGTCCAATCCTTCAGGAAGTAATGGAGAAGCCACATATTGCTGCCGATGGGTTTACCTACGAATACGAGGCGATAAAGGCGTGGCTGGATAGACATGAAGTATCACCGGTGACAAAGCTTAGACTTCAGCATTCTATGGTAACACCAAATCACACTTTAAGATCTGCCATACAAGAATGGAAGTCATCTTTGAAACTTCCCTACGCTCAGTTTGGATAA 2175 42.62 MVAVNGVPGRSSGGGSRRAVQWAVENLLPGAGRLLLVHVMPKITSIPTPLGDGVPVTALDANVVALYTQDMKEKFDQIFVPFKKLCWENKVETLVLEDDNPATALVRYISESDIKTLVLGSCSSNFMTRKLKGPGVPTTVLRNAPNSCNIFIISKRRIITRTTSSSPTSETDSRQCIPSESNYEEGADRFCSSSAESEGSSRTVYSERIHDDLENKQEIDSSKLGFAASETEQVDMQREIESLQLDLENTVAMYKRACEELVHTQNKVQSLSSEWHEETRRTKSAMEREEDSRKIAAEEKAKHLEAMKALEEAKALLAKEAYERQLAEQNALKISLEKQRIVDTLISSDKRYRRYTGEEIEIATDFFSESNMIGQGGYGKVYKCYLDGTLVAVKVLQPGEFDKKNEFLKEVEVLSQIRHPHVVLLLGACPERGCLVYEFLENGSLDEYILQQRRKPPLPWLVRFRIIHQVACGLSFLHNSKPEPIIHRDLKPGNILLDRNYVVKIADVGLAKITGDIVPDNITEYKNSIIFGTLHYMDPEYQRTGTVRPKSDLYAFGVIVLQMLTGRRPHGLILAVENAISSGSLADILDKSVSDWPLSETEELAKIALGCTKLRCRDRPDLDAEVMPILNTILNVAEFSQKILGYVPSHYLCPILQEVMEKPHIAADGFTYEYEAIKAWLDRHEVSPVTKLRLQHSMVTPNHTLRSAIQEWKSSLKLPYAQFG 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10117529 10121480 - Bda007501.1 Bda11g01037 16145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01037 724 Pfam Universal stress protein family 16 147 IPR006016 -
Bda11g01037 724 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 200 715 - -
Bda11g01037 724 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 2 204 - -
Bda11g01037 724 ProSitePatterns Serine/Threonine protein kinases active-site signature. 485 497 IPR008271 GO:0004672|GO:0006468
Bda11g01037 724 SMART Ubox_2 650 712 IPR003613 GO:0004842|GO:0016567
Bda11g01037 724 Pfam Protein tyrosine and serine/threonine kinase 370 623 IPR001245 GO:0004672|GO:0006468
Bda11g01037 724 Gene3D Phosphorylase Kinase; domain 1 346 439 - -
Bda11g01037 724 CDD RING-Ubox_WDSUB1_like 651 691 - -
Bda11g01037 724 Coils Coil 293 339 - -
Bda11g01037 724 Pfam U-box domain 647 714 IPR003613 GO:0004842|GO:0016567
Bda11g01037 724 PANTHER OS02G0152300 PROTEIN 200 715 - -
Bda11g01037 724 PANTHER OS02G0152300 PROTEIN 2 204 - -
Bda11g01037 724 ProSiteProfiles U-box domain profile. 646 719 IPR003613 GO:0004842|GO:0016567
Bda11g01037 724 ProSitePatterns Protein kinases ATP-binding region signature. 373 394 IPR017441 GO:0005524
Bda11g01037 724 CDD STK_N 19 155 - -
Bda11g01037 724 Gene3D HUPs 1 153 IPR014729 -
Bda11g01037 724 SUPERFAMILY RING/U-box 644 717 - -
Bda11g01037 724 SUPERFAMILY Protein kinase-like (PK-like) 349 622 IPR011009 -
Bda11g01037 724 MobiDBLite consensus disorder prediction 273 293 - -
Bda11g01037 724 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 646 718 IPR013083 -
Bda11g01037 724 Gene3D Transferase(Phosphotransferase) domain 1 440 643 - -
Bda11g01037 724 Coils Coil 254 274 - -
Bda11g01037 724 SMART serkin_6 367 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda11g01037 724 ProSiteProfiles Protein kinase domain profile. 367 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda11g01037 724 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 15 145 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01037 - - - cpep:111805862 885.945
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g01340 Bda11g01037 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g01505 Bda-Chr9:46821234 Bda11g01037 Bda-Chr11:10117529 1.27E-100 dispersed
Bda10g00057 Bda-Chr10:1155318 Bda11g01037 Bda-Chr11:10117529 1.74E-55 dispersed
Bda11g00250 Bda-Chr11:2944523 Bda11g01037 Bda-Chr11:10117529 3.75E-83 dispersed
Bda11g00887 Bda-Chr11:8708552 Bda11g01037 Bda-Chr11:10117529 7.25E-17 dispersed
Bda11g01037 Bda-Chr11:10117529 Bda13g01593 Bda-Chr13:39499540 3.43E-135 dispersed
Bda11g01037 Bda-Chr11:10117529 Bda06g00764 Bda-Chr6:10637430 1.13E-156 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g145 . Blo16g00977 Bda01g01340 Bda11g01037 . . . . . . Cma05g01403 Cma12g00651 Car05g01319 Car12g00600 . . . . . . . . . . Cla11g00152 . . . . . . . . . . . Csa02g00037 Chy05g01451 . . . . . . Bpe13g01247 . Bma06g00882 . Cmo05g01403 Cmo12g00590 . . . . Cpe11g01178 . Bhi06g01630 . . . . . . . . . . . . . Lsi11g00178 . . Cme05g02054
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g01037 BCT 2 718 Plant U-box Gene Family AT5G57035 51.4 1.0e-212 736.9
Bda15g00275 . 199 392 Plant U-box Gene Family AT5G05230 54.5 2.6e-49 193.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008876 1 1 1 2 1 0 2 1 1 1 1 0 1 1 1 1 0 0 1 0 1 1 0 1 1 1 1 1 2 1 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69919 PF07714 PK_Tyr_Ser-Thr 3.00E-42 CL0016 Bda PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01037 Bda_Chr11 FPKM 26.99752 29.768314 30.509602 29.145494 25.907703 26.264854 27.657606 24.930847 25.966824