Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01079 ATGTCGTGGCAAGTATATGTCGATGACCATCTGATGTGCGACATGGAAGGAAATCAGCTCAGTGCTGCTGCAATCATCGGCCATGACGGTAGCGTTTGGGCCCAGAGCTCCACCTTCCCTCCGTTCAAGCCTGAAGAAATAACTGGGATTATGAATGACTTTGCTGAGCCTGGAACACTAGCTCCAACTGGCTTGTACCTCGGTGGGGCAAAATATATGGTGATCCAAGGCGAGCCTGGCGCTGTCATTCGTGGGAAGAAGGGCCCTGGTGGTGTTACAGTTAAAAAGACCGGTTTGGCCTTGATCATTGGTATATATGATGAGCCAATGACTCCTGGTCAATGCAACATGATTGTCGAAAGGCTTGGAGACTATCTCATCGAGCAGAATCTTTAG 396 49.24 MSWQVYVDDHLMCDMEGNQLSAAAIIGHDGSVWAQSSTFPPFKPEEITGIMNDFAEPGTLAPTGLYLGGAKYMVIQGEPGAVIRGKKGPGGVTVKKTGLALIIGIYDEPMTPGQCNMIVERLGDYLIEQNL 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10534880 10536711 + Bda007549.1 Bda11g01079 16187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01079 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Bda11g01079 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Bda11g01079 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779
Bda11g01079 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Bda11g01079 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Bda11g01079 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Bda11g01079 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Bda11g01079 131 PANTHER PROFILIN-2 1 131 - -
Bda11g01079 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Bda11g01079 131 PANTHER PROFILIN 1 131 IPR005455 GO:0003779
Bda11g01079 131 CDD PROF 2 130 IPR005455 GO:0003779
Bda11g01079 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Bda11g01079 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Bda11g01079 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Bda11g01079 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Bda11g01079 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779
Bda11g01079 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Bda11g01079 131 Pfam Profilin 1 130 IPR005455 GO:0003779
Bda11g01079 131 Gene3D Dynein light chain 2a, cytoplasmic 2 131 - -
Bda11g01079 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Bda11g01079 131 SMART prof_2 1 131 IPR005455 GO:0003779
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda09g01121 Bda11g01079 CCT
Bda09g01121 Bda11g01079 ECH
Bda01g02037 Bda11g01079 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g01121 Bda-Chr9:41825566 Bda11g01079 Bda-Chr11:10534880 8.15E-73 dispersed
Bda01g02037 Bda-Chr1:56644095 Bda11g01079 Bda-Chr11:10534880 3.47E-90 wgd
Bda11g01079 Bda-Chr11:10534880 Bda02g00405 Bda-Chr2:44628453 1.32E-71 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01079 K05759 - qsu:111995052 241.121