Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01093 ATGGCTGACTCGTTCAACTCGTCTTCCTCGCCTAGCTCTTCTATTTCGCCTGGACCCGACCCGAAGAAGGGTAAGCGAGCCCGGGAAAGTGACGGCAAGCACCCGGTTTACAGAGGGGTACGAATGCGGGCTTGGGGAAAATGGGTATCCGAAATCCGGGAACCGCGAAAGAAGAACCGGATTTGGCTCGGAACCTTCTCGACGCCGGAAATGGCGGCTCGAGCTCACGACGTCGCCGCTTTGACAATCAAAGGCAAATCCGCTATTCTCAACTTCCCGGCACTTGCTGGAATGCTTCCCCAACCGGCTTCGAACTCTCCCCGCGACGTTCAAGCCGCCGCTGCTTTGGCCGCTTCGATGGAGGTTCTTCCGGCGACTCCACCGGAATCCTATCCGCCTCCACCGTCTGAACAGTCGTCTTCTTCCTCCTCATTCGACATTCCTTCTCCGGAGGAACTCAGCGCCATCGTAGAGCTTCCGAGCTTAGGAACCAGCTACGAATCGCCCGGGTCAGAATTCGTGTTTCTGGACTCGGAAGATCGGTGGCTCTACGCAGAGGACTACGAATACTTCACCCATCAGATATCAGAGACGGAAACAGACAGCTTCCAATTTTTCTTGTGGCGCCATTAA 633 55.77 MADSFNSSSSPSSSISPGPDPKKGKRARESDGKHPVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFSTPEMAARAHDVAALTIKGKSAILNFPALAGMLPQPASNSPRDVQAAAALAASMEVLPATPPESYPPPPSEQSSSSSSFDIPSPEELSAIVELPSLGTSYESPGSEFVFLDSEDRWLYAEDYEYFTHQISETETDSFQFFLWRH 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10692654 10693286 - Bda007562.1 Bda11g01093 16201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01093 210 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Bda11g01093 210 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Bda11g01093 210 MobiDBLite consensus disorder prediction 21 36 - -
Bda11g01093 210 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 6 194 - -
Bda11g01093 210 CDD AP2 37 95 IPR001471 GO:0003700|GO:0006355
Bda11g01093 210 MobiDBLite consensus disorder prediction 124 148 - -
Bda11g01093 210 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Bda11g01093 210 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Bda11g01093 210 Gene3D AP2/ERF domain 36 94 IPR036955 GO:0003700|GO:0006355
Bda11g01093 210 MobiDBLite consensus disorder prediction 1 36 - -
Bda11g01093 210 SUPERFAMILY DNA-binding domain 36 94 IPR016177 GO:0003677
Bda11g01093 210 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 194 - -
Bda11g01093 210 MobiDBLite consensus disorder prediction 1 17 - -
Bda11g01093 210 Pfam AP2 domain 35 85 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02052 Bda-Chr1:56783535 Bda11g01093 Bda-Chr11:10692654 3.99E-93 dispersed
Bda02g00418 Bda-Chr2:44826486 Bda11g01093 Bda-Chr11:10692654 2.07E-62 dispersed
Bda09g01132 Bda-Chr9:41989133 Bda11g01093 Bda-Chr11:10692654 3.64E-59 dispersed
Bda11g00829 Bda-Chr11:8213516 Bda11g01093 Bda-Chr11:10692654 5.37E-56 dispersed
Bda11g01093 Bda-Chr11:10692654 Bda13g00507 Bda-Chr13:6045528 1.59E-82 dispersed
Bda01g02051 Bda-Chr1:56777298 Bda11g01093 Bda-Chr11:10692654 1.68E-74 wgd
Bda11g01093 Bda-Chr11:10692654 Bda02g00425 Bda-Chr2:44879849 2.51E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16655 PF00847 AP2 1.30E-13 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01093 K09286 - jre:108986620 232.646