Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01137 ATGCAAACGCCTTCGTTTCCCAGCATGTATTCCAGTGGAAATGGCTGTTCTGAACCAGATGAAGACTCCATTTTCCTTTCTCTTTGTCCTCCGGGCCAGCCCATCTCTAAGGACCATTTTCTTAACCACTCTTCTTCTTCTTCGTCTTCTTCCTCGCACCAACCTCTAATTTATCACCAAAACCCTAACGTAGACAACAGTGTTACAGTAGCCTTGCACGTTGGTCCACCTTCCTGTACAAACCCTAACGAATCCTTTTCTCGTCCTCTCGACGGCCATTACTGGATTCCTTCACCAGTTCAAATCCTCGTCGGCCCTACTCAGTTTTCTTGTACTGTTTGCGACAAAACTTTCAACAGATACAATAACATGCAGATGCATATGTGGGGACATGGATCGCAATACAGGAAAGGTCCGGAATCATTAAAAGGAACAAAAGCAGCTTCTTCTTCGCTTAGATTGCCTTGCTATTGCTGCGCAGAAGGGTGCAAAAACAACATAGAACATCCAAGATCGAAGCCATTAAAGGATTTCAGAACTCTGCAGACCCATTACAAGAGAAAGCATGGGGCGAAGCCATTTGGGTGCAGAAAATGTGGAAAGCCTTTTGCAGTGAGAGGAGATTGGAGGACTCACGAGAAAAACTGTGGAAAGCTCTGGTTTTGCATTTGTGGGTCTGATTTCAAGCACAAAAGGTCTCTGAAAGATCACGTTCGAGCCTTTGGAAATGGCCATGCATCTCATTCTGTTGAACTTTGCCAGGTTGATGAGGAAGAAAATTTGGATTATCAGGAGGAACAACATGAAAATAGAGATCGTGGGTCTGTGTTTTATTAG 837 44.32 MQTPSFPSMYSSGNGCSEPDEDSIFLSLCPPGQPISKDHFLNHSSSSSSSSSHQPLIYHQNPNVDNSVTVALHVGPPSCTNPNESFSRPLDGHYWIPSPVQILVGPTQFSCTVCDKTFNRYNNMQMHMWGHGSQYRKGPESLKGTKAASSSLRLPCYCCAEGCKNNIEHPRSKPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGNGHASHSVELCQVDEEENLDYQEEQHENRDRGSVFY 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11545511 11546505 - Bda007622.1 Bda11g01137 16245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01137 278 ProSiteProfiles Zinc finger C2H2 type domain profile. 109 136 IPR013087 -
Bda11g01137 278 PANTHER ZINC FINGER PROTEIN WIP6 9 271 - -
Bda11g01137 278 Gene3D Classic Zinc Finger 153 241 - -
Bda11g01137 278 Pfam Zinc finger, C2H2 type 109 128 IPR013087 -
Bda11g01137 278 Gene3D Classic Zinc Finger 108 131 - -
Bda11g01137 278 PANTHER ZINC FINGER PROTEIN WIP2 9 271 IPR043584 GO:0003700|GO:0010468
Bda11g01137 278 SMART c2h2final6 194 214 IPR013087 -
Bda11g01137 278 SMART c2h2final6 109 131 IPR013087 -
Bda11g01137 278 SMART c2h2final6 157 189 IPR013087 -
Bda11g01137 278 ProSitePatterns Zinc finger C2H2 type domain signature. 111 131 IPR013087 -
Bda11g01137 278 SUPERFAMILY beta-beta-alpha zinc fingers 175 214 IPR036236 -
Bda11g01137 278 SUPERFAMILY beta-beta-alpha zinc fingers 77 131 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01137 Bda-Chr11:11545511 Bda09g00221 Bda-Chr9:3046297 4.56E-23 dispersed
Bda11g01137 Bda-Chr11:11545511 Bda11g00677 Bda-Chr11:6795926 1.36E-102 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16664 PF00096 zf-C2H2 0.0039 CL0361 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01137 - - zju:107429479 422.55