Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01138 ATGGCGGAGAAGCAATTAATCCTGGTCGTTGAAGGCACCGCAGCAATGGGCCCTTTCTGGCATTCCATTGTTACCGATTACCTTGAGAAGATCGTAAGATGTTTTCATGGAAATGAATTGCCTGGACAGAAGTCCCCATTATCAAACATGGAGTTCTCTGTGGTCACTTATCATGCACATGGATCTTATTGTGGTTGTCTAGTGCAACGGAGTGGCTGGACAAGAGACTTAGACACTTTCTTTCAATGGCTTTTGGCTCTACCCTTTGTTGGGGGTGGTTTTAGTGAAGCTGCTGTGGCAGAAGGGCTTGCCGAAGCTTTGATGATGTTCTCAATTACACCAAATGGTAATCAAAATCAACAAAAAGCAGATGGGCAAAGACACTGCATTCTTGTTGCTGCCAATAATCCTTATCCCCTGCCGACACCAGTTTATCGTCCACCTGTACAAAATTTGGAGCAGAGTGAAAATGTTGAAGCACAAACAGGAAATCTTCAATCTGATGCTGAGGCAGTGGCTAAATCATTTGCTCAGTGCTCCATATCTCTATCAGTCATCAGTCCTAAACAGTATCCAAAGCTTAGAGCTGTTTATAATGCGGCAAAACGTAATCCACGAGCAGCGGAACCAACTGTTGACAATGTTAAAAATCCTCAGTTTCTGATTCTGATCTCAGAGAATTTTGTGGAAGCTCGTAGTGCTTTAACTCATCCTGGAACCACTAATTTGCCCTCAAACCAGGCACCTGTTAAAATGGACATTGCTTCCGTTACGTCAGTTAGTGGGCCCCTTCCAGCCTCCATTCCGACAGTGAATGGATCAATTATGAACAGGCAACCAGCTCCTGTGGTAGTTGTGCCTTCCGCCACTGTGAAAGTTGAGCCAAACACAGTTAATCCTATGGTAACTGGACCTGCTGGTCCACACATTCCATCTGTTCCTCGTGCTACTGGTCAGGGCGTCCCAAGCTTGCAGACTTCTTCTCCATCTTCTGCTTCTCAAGAAATGCTCACAAATAATAACGACAACTTGTTGGATTTGAAACCAATAGTGGCAGTTTCCCAGCCATCACGTCCAGTTGGTCCTGCTCCTGCTAATGTTAGTATTCTGAACAATCTCTCACAAGCCCGCCAAGCTATGAACTCTGCTGCATTAAGTGGAGGAACGTCTATGGGACTTCCATCAATGAGCCAACCGCTAGTGGCAATGCATATGTCTAACATGATCTCAAGTGGAATGGGATCCTCTGTGCCTGCCGCTCAGAATGTATTCTCGTCAGGCCAATCAACCATGACGACAATTTCTGGTACTCTAACACAAGTTCCACAGAATTCAGGTCTTGGTTCATTCAATTCAGCAACCAATAATATGTCTAATAGCTCAAACGTCGGAATTTCACAATCGATGAGTAACATCCCGAGTGGCGTTAGTATGAGTCAATCTGTTTCTGGGTTGACTCAAGGAAATCTTTCAGGAGCACAAATGGTACAAGGTGGAATTAGTGTGAATCAAAGCATGATGAACAACCTTGGTCAATCTGGTGTTTCTTCAGGAAATGGCACTATGATTCCTACTCCTGGAATGGGTCAATCAGTTCAATCTGCAATGCACTCATTAGTTCAAGGTGGGAACAACAATGGAGGAACTAATATGTCGTTACCACAACAGTCATCTGGTGGTTTGCCGCCAGTCCAATCCAAATATGTCAAAGTTTGGGAGGGAAATTTGTCTGGTCAGAGACAAGGACAGCCTGTTTTCATTACGAGACTAGAAGGGTACAGGAGTGCTTTAGCTTCTGAGACGCTTGCAGCAAACTGGCCATTGACAATGCAAATAGTACGGCTGATCTCTCAAGATCACATGAATAACAAGCAATATGTTGGAAAGGCCGATTTCCTAGTTTTCCGGGCGATGAATCAGCATGGATTTCTTGGCCAACTTCAAGAAAAAAAGCTTTGTGCAGTCATACAGTTACCATCCCAGACATTACTTTTATCTGTATCAGACAAAGCTTGCCGCCTGATCGGAATGCTTTTTCCTGGGGACATGGTTGTGTTTAAGCCACAACAGCCGCAACAGATGCAACAACAGCAGCAGATGCAACAGCAACAGCTTCCTCAGCTTCAACAACAGCTTCCTCAGCTTCAACAACAGCAGGGTCTCTCTCAGTTGCAGCCCCAGCAACAGCTTCAGCAACAAATGGTTCCAAATGGGTTGACCCAAACTTATGTGCAAGGTCCCGGCCGATCACAGATGGTCCCTCAGCAGCAAGTTTCTTCCCAAAACATGCCGGGCGGAGCTTTTATAAGTTGA 2313 45.14 MAEKQLILVVEGTAAMGPFWHSIVTDYLEKIVRCFHGNELPGQKSPLSNMEFSVVTYHAHGSYCGCLVQRSGWTRDLDTFFQWLLALPFVGGGFSEAAVAEGLAEALMMFSITPNGNQNQQKADGQRHCILVAANNPYPLPTPVYRPPVQNLEQSENVEAQTGNLQSDAEAVAKSFAQCSISLSVISPKQYPKLRAVYNAAKRNPRAAEPTVDNVKNPQFLILISENFVEARSALTHPGTTNLPSNQAPVKMDIASVTSVSGPLPASIPTVNGSIMNRQPAPVVVVPSATVKVEPNTVNPMVTGPAGPHIPSVPRATGQGVPSLQTSSPSSASQEMLTNNNDNLLDLKPIVAVSQPSRPVGPAPANVSILNNLSQARQAMNSAALSGGTSMGLPSMSQPLVAMHMSNMISSGMGSSVPAAQNVFSSGQSTMTTISGTLTQVPQNSGLGSFNSATNNMSNSSNVGISQSMSNIPSGVSMSQSVSGLTQGNLSGAQMVQGGISVNQSMMNNLGQSGVSSGNGTMIPTPGMGQSVQSAMHSLVQGGNNNGGTNMSLPQQSSGGLPPVQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSALASETLAANWPLTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQQPQQMQQQQQMQQQQLPQLQQQLPQLQQQQGLSQLQPQQQLQQQMVPNGLTQTYVQGPGRSQMVPQQQVSSQNMPGGAFIS 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11571881 11586750 + Bda007624.1 Bda11g01138 16246

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01138 770 MobiDBLite consensus disorder prediction 316 335 - -
Bda11g01138 770 PANTHER BNACNNG04590D PROTEIN 3 733 - -
Bda11g01138 770 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 25 3 733 IPR045105 -
Bda11g01138 770 MobiDBLite consensus disorder prediction 746 770 - -
Bda11g01138 770 MobiDBLite consensus disorder prediction 318 335 - -
Bda11g01138 770 Coils Coil 698 718 - -
Bda11g01138 770 Pfam Mediator complex subunit 25 von Willebrand factor type A 3 226 IPR021419 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01138 K15168 MED25; mediator of RNA polymerase II transcription subunit 25 - jre:109002616 950.658
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g273 . Blo16g01055 . Bda11g01138 Bpe13g01334 . . . . Cmo18g01056 . Cma18g01038 . Car18g00964 . Cpe09g00279 Cpe01g01352 Bhi07g01363 . . Lac13g0465 . . . . . . . . . . . . Cone6ag0462 Cone9ag0474 Lsi04g00283 Csa05g02586 Chy10g01121 Cme10g00285 . . . Bda11g01138 . . . Bma06g00767 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007530 1 2 1 1 2 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01138 Bda_Chr11 FPKM 14.215567 14.78506 20.203985 21.733101 12.977545 12.500886 12.05794 22.487019 21.511593