Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g01155 GATAATTTCATCTTTCTCATACAGTCATGTAAGGCTCTGAATCTCCTCCATCAAGTTCAAGCTCAAATCGTCGTCAATGGGTTTCACCAGAACAGCTACGTTGCCCCAAAGCTCGTCACTGCATTCGCCGGGTTTAAGAAAATGGCGGATGCCCGCCGATTGTTCGATCATTTTCCCTATCCAGGTGTTTCTCTGTGGAATGCCATGTTCAGGGGCTACCTCGAGAACGAGATCTTCAGGGATGTAGTTGTTTTGTTTGGAAAAATGAAGAACATTGACGTAGCGCCGAACTGCTTCACATTCCCCATCGTTCTCAAATCTTGTGGAAAAATCAGGGCATTAATCGAAGGCGAGGAAGTCTATTGTCTAATTCTCAAGAGTGGTTTTAGATCAAACCAGTTTATAGCTACTACTTTGATAGATATGTATGCGACCGGAGGAATGATTAAATCGGCTTATAAGGTGTTCACTGAGATGCTTGATAGAAATGTTTTCGCCTGGACTTCAATGATTAATGGCTACATATTCTGTTCTGACATGGTTTCTGCTCGTCGTCTTTTTGATTTGGCGCCTGAACGAGACATTGTTCTGTGGAATACGATGATTTCAGGATACATAGAAAGAAAGAACATGGCAGAAGCATGTAAGCTGTTCGATGAAATGCCGAGCAGAGATGTAATCTGTTGGAACACGTTGTTGAACGGCTACGGAAATAATGGCAAAATCGACGCTTGTGAGAGGTTGTTCGAGGAGATGCCAGAGAGAAATATTTTCTCGTGGAATGGAATGATCGGAGGGTATGCGCATAATGGACAATATTTTGACGTATTGGAGTGCTTTCAACAAATGTTACTGGAGGGTAATGTGATGCCTAATCATGCCACTTTAGTTTCCGTGTTGTCCGCCTGTGCGAGATTAGGAGCGCTTGATTTGGGCAAATGGGTCCATGTATATGCAAATAATGCCGGGTTTAAAGGAAATGTTTTTGTCGGAAACGCGCTTGTCGACATGTATGCGAAATGTGGGACTGTAGAAAATTCAGTTGTTGTGTTCAAGAACATGAAAACCAAAGATTTAATCACTTGGAACTCTCTTATTTGTGGCTTGGCAATGCATGGCCGTGGAGCTGATGCATTATCTATATTTAATGAGATGAAGATCGATGGAGAAAAGCCTGACGGGATCACCTTCGTCGGTATTTTGTGCGCTTGTACACATCTCGGATTAGTAGAAGATGGAATTTCATATTTTCAGTCTATGATTGATGAGTACTCAATTGTGCCTCAAATTGAGCATTACGGGTGTATAGTTGATTTGTTGGGCAAAGCCGGACTCTTAGCTAAGGCGATAGAATTTGTCAGAAACATGCCTATAGAAGCCGACGCCATTATTTGGGCCTCCGTTCTCGGTGCCAGCCGAATTTACAAAAACATCGAAGTAGCTGAACTAGCGATTCAACATCTCTTTCAGTTCGAACCTAAAAACCCGGCAAATTATGTCGTGCTTTCAAATGTTTACGGACATCTAGGGAGATGGAAAGATGTCGCTCGATTCAAAGTTGCGATGCGAGATACTGGATTCAAAAAAGTACCTGGCTGTAGTTTGATCGAGATTGATAACGATGTGGTCGAGTTCTATTCCTCAGACGAAAGGCTTTGCGAAAATGAGGATATTTATGAAGCCTTAAAGGGGTTGACAAAGTTGTTAAGATCTTTGGGCTATGTACCGGATCTTGTCGAGTTATATAGCCTGGATCATATAGAAGATTATGCTGGATGA 1779 42.33 DNFIFLIQSCKALNLLHQVQAQIVVNGFHQNSYVAPKLVTAFAGFKKMADARRLFDHFPYPGVSLWNAMFRGYLENEIFRDVVVLFGKMKNIDVAPNCFTFPIVLKSCGKIRALIEGEEVYCLILKSGFRSNQFIATTLIDMYATGGMIKSAYKVFTEMLDRNVFAWTSMINGYIFCSDMVSARRLFDLAPERDIVLWNTMISGYIERKNMAEACKLFDEMPSRDVICWNTLLNGYGNNGKIDACERLFEEMPERNIFSWNGMIGGYAHNGQYFDVLECFQQMLLEGNVMPNHATLVSVLSACARLGALDLGKWVHVYANNAGFKGNVFVGNALVDMYAKCGTVENSVVVFKNMKTKDLITWNSLICGLAMHGRGADALSIFNEMKIDGEKPDGITFVGILCACTHLGLVEDGISYFQSMIDEYSIVPQIEHYGCIVDLLGKAGLLAKAIEFVRNMPIEADAIIWASVLGASRIYKNIEVAELAIQHLFQFEPKNPANYVVLSNVYGHLGRWKDVARFKVAMRDTGFKKVPGCSLIEIDNDVVEFYSSDERLCENEDIYEALKGLTKLLRSLGYVPDLVELYSLDHIEDYAG 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11810772 11812550 + Bda007646.1 Bda11g01155 16263

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g01155 592 PANTHER - 28 175 - -
Bda11g01155 592 PANTHER - 7 79 - -
Bda11g01155 592 PANTHER - 174 577 - -
Bda11g01155 592 TIGRFAM PPR: pentatricopeptide repeat domain 196 226 IPR002885 -
Bda11g01155 592 TIGRFAM PPR: pentatricopeptide repeat domain 137 164 IPR002885 -
Bda11g01155 592 TIGRFAM PPR: pentatricopeptide repeat domain 360 393 IPR002885 -
Bda11g01155 592 TIGRFAM PPR: pentatricopeptide repeat domain 227 257 IPR002885 -
Bda11g01155 592 TIGRFAM PPR: pentatricopeptide repeat domain 258 289 IPR002885 -
Bda11g01155 592 Pfam E motif 475 537 IPR046848 -
Bda11g01155 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 194 224 IPR002885 -
Bda11g01155 592 PANTHER - 174 577 - -
Bda11g01155 592 Pfam PPR repeat 228 257 IPR002885 -
Bda11g01155 592 Pfam PPR repeat 258 287 IPR002885 -
Bda11g01155 592 Pfam PPR repeat 166 192 IPR002885 -
Bda11g01155 592 Pfam PPR repeat 137 164 IPR002885 -
Bda11g01155 592 PANTHER - 28 175 - -
Bda11g01155 592 PANTHER - 7 79 - -
Bda11g01155 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 392 IPR002885 -
Bda11g01155 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
Bda11g01155 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 62 96 IPR002885 -
Bda11g01155 592 Pfam PPR repeat family 357 404 IPR002885 -
Bda11g01155 592 Pfam PPR repeat family 194 226 IPR002885 -
Bda11g01155 592 Pfam PPR repeat family 61 109 IPR002885 -
Bda11g01155 592 Gene3D Tetratricopeptide repeat domain 210 312 IPR011990 GO:0005515
Bda11g01155 592 Gene3D Tetratricopeptide repeat domain 7 116 IPR011990 GO:0005515
Bda11g01155 592 Gene3D Tetratricopeptide repeat domain 117 209 IPR011990 GO:0005515
Bda11g01155 592 Gene3D Tetratricopeptide repeat domain 313 427 IPR011990 GO:0005515
Bda11g01155 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 132 166 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g01155 - - - mcha:111010545 857.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00071 Bda-Chr5:3678108 Bda11g01155 Bda-Chr11:11810772 3.30E-26 dispersed
Bda07g00521 Bda-Chr7:6673869 Bda11g01155 Bda-Chr11:11810772 4.08E-68 dispersed
Bda11g01155 Bda-Chr11:11810772 Bda13g01702 Bda-Chr13:40378660 2.47E-156 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g318 . . . Bda11g01155 Bpe13g01353 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01155 . . . Bma06g00752 . . Cmo15g00949 . Cma15g00911 . Car15g00855 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013696 1 1 0 1 1 1 1 1 0 1 1 1 1 2 0 1 0 0 0 1 1 1 1 0 1 1 1 1 1 1 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g01155 Bda_Chr11 FPKM 0.0 0.0 0.0 0.0 5.698594 4.928239 5.255356 0.0 0.0